Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03552 and ECD_03553 overlap by 1 nucleotides ECD_03553 and ECD_03554 are separated by 74 nucleotides ECD_03554 and ECD_03555 are separated by 3 nucleotides
ECD_03552: ECD_03552 - sensory histidine kinase in two-component regulatory sytem with UhpA, at 3,737,001 to 3,738,503
_03552
ECD_03553: ECD_03553 - response regulator in two-component regulatory system wtih UhpB, at 3,738,503 to 3,739,093
_03553
ECD_03554: ECD_03554 - acetolactate synthase 1 small subunit, at 3,739,168 to 3,739,458
_03554
ECD_03555: ECD_03555 - acetolactate synthase 2 large subunit, at 3,739,462 to 3,741,150
_03555
Position (kb)
3738
3739
3740 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3737.531 kb on + strand, within ECD_03552 at 3737.538 kb on - strand, within ECD_03552 at 3737.538 kb on - strand, within ECD_03552 at 3737.666 kb on + strand, within ECD_03552 at 3737.666 kb on + strand, within ECD_03552 at 3737.667 kb on - strand, within ECD_03552 at 3737.667 kb on - strand, within ECD_03552 at 3737.667 kb on - strand, within ECD_03552 at 3737.739 kb on + strand, within ECD_03552 at 3737.740 kb on - strand, within ECD_03552 at 3737.828 kb on - strand, within ECD_03552 at 3737.828 kb on - strand, within ECD_03552 at 3737.939 kb on - strand, within ECD_03552 at 3738.012 kb on - strand, within ECD_03552 at 3738.022 kb on + strand, within ECD_03552 at 3738.023 kb on - strand, within ECD_03552 at 3738.042 kb on + strand, within ECD_03552 at 3738.043 kb on - strand, within ECD_03552 at 3738.069 kb on + strand, within ECD_03552 at 3738.236 kb on + strand, within ECD_03552 at 3738.289 kb on + strand, within ECD_03552 at 3738.290 kb on - strand, within ECD_03552 at 3738.423 kb on - strand at 3738.456 kb on - strand at 3738.456 kb on - strand at 3738.480 kb on + strand at 3738.480 kb on + strand at 3738.480 kb on + strand at 3738.481 kb on - strand at 3738.481 kb on - strand at 3738.481 kb on - strand at 3738.481 kb on - strand at 3738.709 kb on + strand, within ECD_03553 at 3738.733 kb on - strand, within ECD_03553 at 3738.784 kb on + strand, within ECD_03553 at 3738.785 kb on - strand, within ECD_03553 at 3738.865 kb on + strand, within ECD_03553 at 3738.865 kb on + strand, within ECD_03553 at 3738.878 kb on - strand, within ECD_03553 at 3738.897 kb on - strand, within ECD_03553 at 3738.916 kb on + strand, within ECD_03553 at 3738.940 kb on + strand, within ECD_03553 at 3738.941 kb on - strand, within ECD_03553 at 3738.941 kb on - strand, within ECD_03553 at 3739.007 kb on + strand, within ECD_03553 at 3739.008 kb on - strand, within ECD_03553 at 3739.008 kb on - strand, within ECD_03553 at 3739.008 kb on - strand, within ECD_03553 at 3739.073 kb on + strand at 3739.073 kb on + strand at 3739.074 kb on - strand at 3739.074 kb on - strand at 3739.074 kb on - strand at 3739.128 kb on - strand at 3739.194 kb on + strand at 3739.194 kb on + strand at 3739.219 kb on - strand, within ECD_03554 at 3739.219 kb on - strand, within ECD_03554 at 3739.261 kb on + strand, within ECD_03554 at 3739.262 kb on - strand, within ECD_03554 at 3739.262 kb on - strand, within ECD_03554 at 3739.262 kb on - strand, within ECD_03554 at 3739.305 kb on + strand, within ECD_03554 at 3739.306 kb on - strand, within ECD_03554 at 3739.396 kb on + strand, within ECD_03554 at 3739.432 kb on + strand at 3739.433 kb on - strand at 3739.463 kb on + strand at 3739.800 kb on + strand, within ECD_03555 at 3739.800 kb on + strand, within ECD_03555 at 3739.801 kb on - strand, within ECD_03555 at 3739.992 kb on + strand, within ECD_03555 at 3739.993 kb on - strand, within ECD_03555 at 3739.993 kb on - strand, within ECD_03555
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 3,737,531 + ECD_03552 0.35 -0.2 3,737,538 - ECD_03552 0.36 +0.5 3,737,538 - ECD_03552 0.36 +0.7 3,737,666 + ECD_03552 0.44 -0.2 3,737,666 + ECD_03552 0.44 -0.0 3,737,667 - ECD_03552 0.44 +0.1 3,737,667 - ECD_03552 0.44 +0.9 3,737,667 - ECD_03552 0.44 +2.3 3,737,739 + ECD_03552 0.49 +2.3 3,737,740 - ECD_03552 0.49 -0.7 3,737,828 - ECD_03552 0.55 +0.8 3,737,828 - ECD_03552 0.55 +0.2 3,737,939 - ECD_03552 0.62 -0.8 3,738,012 - ECD_03552 0.67 -0.2 3,738,022 + ECD_03552 0.68 +0.8 3,738,023 - ECD_03552 0.68 +0.3 3,738,042 + ECD_03552 0.69 +0.8 3,738,043 - ECD_03552 0.69 +0.3 3,738,069 + ECD_03552 0.71 +2.3 3,738,236 + ECD_03552 0.82 +1.2 3,738,289 + ECD_03552 0.86 +0.4 3,738,290 - ECD_03552 0.86 +0.4 3,738,423 - +0.1 3,738,456 - -2.1 3,738,456 - +1.4 3,738,480 + +0.9 3,738,480 + +0.5 3,738,480 + -1.1 3,738,481 - +0.5 3,738,481 - -0.0 3,738,481 - -0.2 3,738,481 - -0.1 3,738,709 + ECD_03553 0.35 +0.2 3,738,733 - ECD_03553 0.39 +0.2 3,738,784 + ECD_03553 0.48 +0.2 3,738,785 - ECD_03553 0.48 -0.8 3,738,865 + ECD_03553 0.61 +1.0 3,738,865 + ECD_03553 0.61 +0.1 3,738,878 - ECD_03553 0.63 +0.1 3,738,897 - ECD_03553 0.67 -0.8 3,738,916 + ECD_03553 0.70 -0.4 3,738,940 + ECD_03553 0.74 -2.7 3,738,941 - ECD_03553 0.74 +0.3 3,738,941 - ECD_03553 0.74 +0.4 3,739,007 + ECD_03553 0.85 -0.4 3,739,008 - ECD_03553 0.85 +0.4 3,739,008 - ECD_03553 0.85 -0.1 3,739,008 - ECD_03553 0.85 -0.8 3,739,073 + +0.3 3,739,073 + +0.1 3,739,074 - +1.1 3,739,074 - -0.0 3,739,074 - +0.5 3,739,128 - +0.3 3,739,194 + +0.1 3,739,194 + +0.6 3,739,219 - ECD_03554 0.18 -0.4 3,739,219 - ECD_03554 0.18 +1.0 3,739,261 + ECD_03554 0.32 +0.1 3,739,262 - ECD_03554 0.32 +0.2 3,739,262 - ECD_03554 0.32 +1.5 3,739,262 - ECD_03554 0.32 +0.3 3,739,305 + ECD_03554 0.47 +0.6 3,739,306 - ECD_03554 0.47 -1.2 3,739,396 + ECD_03554 0.78 -0.8 3,739,432 + +0.9 3,739,433 - +1.1 3,739,463 + -0.6 3,739,800 + ECD_03555 0.20 +0.6 3,739,800 + ECD_03555 0.20 +2.9 3,739,801 - ECD_03555 0.20 -1.1 3,739,992 + ECD_03555 0.31 +0.9 3,739,993 - ECD_03555 0.31 +0.1 3,739,993 - ECD_03555 0.31 -0.2
Or see this region's nucleotide sequence