Strain Fitness in Escherichia coli BL21 around ECD_03366

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03365 and ECD_03366 are separated by 210 nucleotidesECD_03366 and ECD_03367 are separated by 404 nucleotides ECD_03365: ECD_03365 - glutamate decarboxylase A, PLP-dependent, at 3,527,367 to 3,528,767 _03365 ECD_03366: ECD_03366 - putative cytochrome C peroxidase, at 3,528,978 to 3,530,375 _03366 ECD_03367: ECD_03367 - cytoplasmic trehalase, at 3,530,780 to 3,532,429 _03367 Position (kb) 3528 3529 3530 3531Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3528.616 kb on + strand, within ECD_03365at 3528.996 kb on - strandat 3528.997 kb on + strandat 3529.041 kb on - strandat 3529.082 kb on - strandat 3529.139 kb on - strand, within ECD_03366at 3529.160 kb on + strand, within ECD_03366at 3529.160 kb on + strand, within ECD_03366at 3529.160 kb on + strand, within ECD_03366at 3529.164 kb on + strand, within ECD_03366at 3529.422 kb on - strand, within ECD_03366at 3529.532 kb on + strand, within ECD_03366at 3529.648 kb on - strand, within ECD_03366at 3529.655 kb on + strand, within ECD_03366at 3529.656 kb on - strand, within ECD_03366at 3529.656 kb on - strand, within ECD_03366at 3529.656 kb on - strand, within ECD_03366at 3529.659 kb on + strand, within ECD_03366at 3529.769 kb on + strand, within ECD_03366at 3529.769 kb on + strand, within ECD_03366at 3529.769 kb on + strand, within ECD_03366at 3529.769 kb on + strand, within ECD_03366at 3529.769 kb on + strand, within ECD_03366at 3529.904 kb on - strand, within ECD_03366at 3529.986 kb on - strand, within ECD_03366at 3530.003 kb on + strand, within ECD_03366at 3530.004 kb on - strand, within ECD_03366at 3530.011 kb on + strand, within ECD_03366at 3530.060 kb on + strand, within ECD_03366at 3530.060 kb on + strand, within ECD_03366at 3530.106 kb on - strand, within ECD_03366at 3530.106 kb on - strand, within ECD_03366at 3530.108 kb on - strand, within ECD_03366at 3530.118 kb on - strand, within ECD_03366at 3530.155 kb on + strand, within ECD_03366at 3530.155 kb on + strand, within ECD_03366at 3530.158 kb on + strand, within ECD_03366at 3530.158 kb on + strand, within ECD_03366at 3530.159 kb on - strand, within ECD_03366at 3530.159 kb on - strand, within ECD_03366at 3530.161 kb on + strand, within ECD_03366at 3530.234 kb on + strand, within ECD_03366at 3530.273 kb on + strandat 3530.283 kb on - strandat 3530.293 kb on + strandat 3530.302 kb on + strandat 3530.302 kb on + strandat 3530.316 kb on + strandat 3530.317 kb on - strandat 3530.317 kb on - strandat 3530.317 kb on - strandat 3530.358 kb on - strandat 3530.400 kb on + strandat 3530.400 kb on + strandat 3530.513 kb on - strandat 3530.523 kb on + strandat 3530.676 kb on + strandat 3530.780 kb on - strandat 3530.843 kb on + strandat 3530.843 kb on + strandat 3530.843 kb on + strandat 3530.859 kb on - strandat 3530.954 kb on + strand, within ECD_03367at 3531.051 kb on + strand, within ECD_03367at 3531.052 kb on - strand, within ECD_03367at 3531.065 kb on - strand, within ECD_03367at 3531.146 kb on + strand, within ECD_03367at 3531.146 kb on + strand, within ECD_03367at 3531.147 kb on - strand, within ECD_03367at 3531.147 kb on - strand, within ECD_03367at 3531.151 kb on - strand, within ECD_03367at 3531.263 kb on + strand, within ECD_03367at 3531.263 kb on + strand, within ECD_03367at 3531.263 kb on + strand, within ECD_03367at 3531.263 kb on + strand, within ECD_03367at 3531.263 kb on + strand, within ECD_03367at 3531.263 kb on + strand, within ECD_03367at 3531.263 kb on + strand, within ECD_03367at 3531.263 kb on + strand, within ECD_03367at 3531.263 kb on + strand, within ECD_03367at 3531.264 kb on - strand, within ECD_03367at 3531.264 kb on - strand, within ECD_03367at 3531.264 kb on - strand, within ECD_03367at 3531.264 kb on - strand, within ECD_03367at 3531.264 kb on - strand, within ECD_03367at 3531.264 kb on - strand, within ECD_03367at 3531.264 kb on - strand, within ECD_03367at 3531.265 kb on + strand, within ECD_03367at 3531.265 kb on + strand, within ECD_03367at 3531.265 kb on + strand, within ECD_03367at 3531.265 kb on + strand, within ECD_03367at 3531.265 kb on + strand, within ECD_03367at 3531.266 kb on - strand, within ECD_03367at 3531.266 kb on - strand, within ECD_03367at 3531.266 kb on - strand, within ECD_03367at 3531.266 kb on - strand, within ECD_03367at 3531.266 kb on - strand, within ECD_03367at 3531.266 kb on - strand, within ECD_03367

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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3,528,616 + ECD_03365 0.89 -0.3
3,528,996 - -0.3
3,528,997 + +0.1
3,529,041 - -0.5
3,529,082 - +0.6
3,529,139 - ECD_03366 0.12 +0.0
3,529,160 + ECD_03366 0.13 +0.9
3,529,160 + ECD_03366 0.13 -0.3
3,529,160 + ECD_03366 0.13 -2.9
3,529,164 + ECD_03366 0.13 +0.4
3,529,422 - ECD_03366 0.32 -0.1
3,529,532 + ECD_03366 0.40 -0.9
3,529,648 - ECD_03366 0.48 -1.0
3,529,655 + ECD_03366 0.48 -0.2
3,529,656 - ECD_03366 0.48 -0.5
3,529,656 - ECD_03366 0.48 -1.2
3,529,656 - ECD_03366 0.48 +0.7
3,529,659 + ECD_03366 0.49 -0.0
3,529,769 + ECD_03366 0.57 -0.3
3,529,769 + ECD_03366 0.57 +0.1
3,529,769 + ECD_03366 0.57 -1.0
3,529,769 + ECD_03366 0.57 +0.7
3,529,769 + ECD_03366 0.57 +0.0
3,529,904 - ECD_03366 0.66 +0.1
3,529,986 - ECD_03366 0.72 +0.2
3,530,003 + ECD_03366 0.73 +0.4
3,530,004 - ECD_03366 0.73 +0.4
3,530,011 + ECD_03366 0.74 -0.8
3,530,060 + ECD_03366 0.77 +0.1
3,530,060 + ECD_03366 0.77 +0.0
3,530,106 - ECD_03366 0.81 +0.2
3,530,106 - ECD_03366 0.81 +0.5
3,530,108 - ECD_03366 0.81 +0.4
3,530,118 - ECD_03366 0.82 +0.0
3,530,155 + ECD_03366 0.84 -0.5
3,530,155 + ECD_03366 0.84 -2.1
3,530,158 + ECD_03366 0.84 +0.7
3,530,158 + ECD_03366 0.84 +0.5
3,530,159 - ECD_03366 0.84 -0.3
3,530,159 - ECD_03366 0.84 +0.1
3,530,161 + ECD_03366 0.85 +0.5
3,530,234 + ECD_03366 0.90 -0.1
3,530,273 + +0.4
3,530,283 - -0.6
3,530,293 + +0.1
3,530,302 + +0.2
3,530,302 + +0.4
3,530,316 + -0.1
3,530,317 - +0.0
3,530,317 - -0.1
3,530,317 - -0.2
3,530,358 - -0.1
3,530,400 + +1.1
3,530,400 + +0.2
3,530,513 - +0.4
3,530,523 + +0.0
3,530,676 + -1.6
3,530,780 - -0.3
3,530,843 + -0.3
3,530,843 + -0.3
3,530,843 + +0.3
3,530,859 - -0.5
3,530,954 + ECD_03367 0.11 +0.7
3,531,051 + ECD_03367 0.16 -0.7
3,531,052 - ECD_03367 0.16 -0.2
3,531,065 - ECD_03367 0.17 +1.3
3,531,146 + ECD_03367 0.22 -0.4
3,531,146 + ECD_03367 0.22 +2.1
3,531,147 - ECD_03367 0.22 -0.2
3,531,147 - ECD_03367 0.22 -0.9
3,531,151 - ECD_03367 0.22 +1.1
3,531,263 + ECD_03367 0.29 +0.5
3,531,263 + ECD_03367 0.29 -1.4
3,531,263 + ECD_03367 0.29 -0.1
3,531,263 + ECD_03367 0.29 -0.5
3,531,263 + ECD_03367 0.29 +0.1
3,531,263 + ECD_03367 0.29 +0.5
3,531,263 + ECD_03367 0.29 -0.0
3,531,263 + ECD_03367 0.29 +0.1
3,531,263 + ECD_03367 0.29 -0.5
3,531,264 - ECD_03367 0.29 +0.1
3,531,264 - ECD_03367 0.29 -1.7
3,531,264 - ECD_03367 0.29 +0.4
3,531,264 - ECD_03367 0.29 +0.3
3,531,264 - ECD_03367 0.29 -0.6
3,531,264 - ECD_03367 0.29 +1.4
3,531,264 - ECD_03367 0.29 -0.7
3,531,265 + ECD_03367 0.29 +0.1
3,531,265 + ECD_03367 0.29 -0.2
3,531,265 + ECD_03367 0.29 +2.0
3,531,265 + ECD_03367 0.29 +0.1
3,531,265 + ECD_03367 0.29 +0.8
3,531,266 - ECD_03367 0.29 +0.1
3,531,266 - ECD_03367 0.29 +0.3
3,531,266 - ECD_03367 0.29 +1.2
3,531,266 - ECD_03367 0.29 +0.4
3,531,266 - ECD_03367 0.29 +0.2
3,531,266 - ECD_03367 0.29 -0.0

Or see this region's nucleotide sequence