Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03280 and ECD_03281 are separated by 18 nucleotides ECD_03281 and ECD_03282 overlap by 1 nucleotides
ECD_03280: ECD_03280 - glycogen phosphorylase, at 3,427,284 to 3,429,731
_03280
ECD_03281: ECD_03281 - glycogen synthase, at 3,429,750 to 3,431,183
_03281
ECD_03282: ECD_03282 - glucose-1-phosphate adenylyltransferase, at 3,431,183 to 3,432,478
_03282
Position (kb)
3429
3430
3431
3432 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3428.758 kb on - strand, within ECD_03280 at 3428.809 kb on + strand, within ECD_03280 at 3428.810 kb on - strand, within ECD_03280 at 3428.817 kb on - strand, within ECD_03280 at 3428.872 kb on + strand, within ECD_03280 at 3428.872 kb on + strand, within ECD_03280 at 3428.873 kb on - strand, within ECD_03280 at 3428.937 kb on + strand, within ECD_03280 at 3428.937 kb on + strand, within ECD_03280 at 3428.937 kb on + strand, within ECD_03280 at 3428.997 kb on - strand, within ECD_03280 at 3429.076 kb on - strand, within ECD_03280 at 3429.167 kb on + strand, within ECD_03280 at 3429.168 kb on - strand, within ECD_03280 at 3429.168 kb on - strand, within ECD_03280 at 3429.168 kb on - strand, within ECD_03280 at 3429.170 kb on - strand, within ECD_03280 at 3429.221 kb on - strand, within ECD_03280 at 3429.221 kb on - strand, within ECD_03280 at 3429.269 kb on + strand, within ECD_03280 at 3429.270 kb on - strand, within ECD_03280 at 3429.274 kb on + strand, within ECD_03280 at 3429.411 kb on + strand, within ECD_03280 at 3429.412 kb on - strand, within ECD_03280 at 3429.438 kb on + strand, within ECD_03280 at 3429.438 kb on + strand, within ECD_03280 at 3429.439 kb on - strand, within ECD_03280 at 3429.449 kb on - strand, within ECD_03280 at 3429.559 kb on - strand at 3429.620 kb on + strand at 3429.621 kb on - strand at 3429.651 kb on - strand at 3429.664 kb on + strand at 3429.664 kb on + strand at 3429.664 kb on + strand at 3429.665 kb on - strand at 3429.672 kb on - strand at 3429.712 kb on + strand at 3429.712 kb on + strand at 3429.712 kb on + strand at 3429.713 kb on - strand at 3429.713 kb on - strand at 3429.713 kb on - strand at 3429.716 kb on + strand at 3429.716 kb on + strand at 3429.716 kb on + strand at 3429.731 kb on + strand at 3429.731 kb on + strand at 3429.731 kb on + strand at 3429.733 kb on + strand at 3429.733 kb on + strand at 3429.733 kb on + strand at 3429.734 kb on - strand at 3429.751 kb on + strand at 3429.751 kb on + strand at 3429.752 kb on - strand at 3429.766 kb on + strand at 3429.767 kb on - strand at 3429.803 kb on + strand at 3429.804 kb on - strand at 3429.865 kb on - strand at 3429.865 kb on - strand at 3429.888 kb on + strand at 3429.908 kb on + strand, within ECD_03281 at 3429.909 kb on - strand, within ECD_03281 at 3430.019 kb on - strand, within ECD_03281 at 3430.019 kb on - strand, within ECD_03281 at 3430.019 kb on - strand, within ECD_03281 at 3430.313 kb on + strand, within ECD_03281 at 3430.325 kb on + strand, within ECD_03281 at 3430.326 kb on - strand, within ECD_03281 at 3430.326 kb on - strand, within ECD_03281 at 3430.345 kb on - strand, within ECD_03281 at 3430.407 kb on + strand, within ECD_03281 at 3430.407 kb on + strand, within ECD_03281 at 3430.408 kb on - strand, within ECD_03281 at 3430.503 kb on - strand, within ECD_03281 at 3430.508 kb on - strand, within ECD_03281 at 3430.540 kb on + strand, within ECD_03281 at 3430.540 kb on + strand, within ECD_03281 at 3430.541 kb on - strand, within ECD_03281 at 3430.560 kb on - strand, within ECD_03281 at 3430.574 kb on - strand, within ECD_03281 at 3430.574 kb on - strand, within ECD_03281 at 3430.576 kb on + strand, within ECD_03281 at 3430.675 kb on + strand, within ECD_03281 at 3430.676 kb on - strand, within ECD_03281 at 3430.690 kb on + strand, within ECD_03281 at 3430.863 kb on + strand, within ECD_03281 at 3430.863 kb on + strand, within ECD_03281 at 3430.876 kb on + strand, within ECD_03281 at 3430.877 kb on - strand, within ECD_03281 at 3430.884 kb on + strand, within ECD_03281 at 3430.884 kb on + strand, within ECD_03281 at 3430.885 kb on - strand, within ECD_03281 at 3430.885 kb on - strand, within ECD_03281 at 3430.885 kb on - strand, within ECD_03281 at 3430.885 kb on - strand, within ECD_03281 at 3430.921 kb on + strand, within ECD_03281 at 3430.921 kb on + strand, within ECD_03281 at 3430.922 kb on - strand, within ECD_03281 at 3430.946 kb on - strand, within ECD_03281 at 3430.946 kb on - strand, within ECD_03281 at 3430.948 kb on - strand, within ECD_03281 at 3430.948 kb on - strand, within ECD_03281 at 3430.948 kb on - strand, within ECD_03281 at 3430.948 kb on - strand, within ECD_03281 at 3430.948 kb on - strand, within ECD_03281 at 3430.964 kb on - strand, within ECD_03281 at 3430.964 kb on - strand, within ECD_03281 at 3430.985 kb on + strand, within ECD_03281 at 3430.985 kb on + strand, within ECD_03281 at 3430.985 kb on + strand, within ECD_03281 at 3430.985 kb on + strand, within ECD_03281 at 3430.986 kb on - strand, within ECD_03281 at 3430.986 kb on - strand, within ECD_03281 at 3430.986 kb on - strand, within ECD_03281 at 3430.986 kb on - strand, within ECD_03281 at 3431.013 kb on + strand, within ECD_03281 at 3431.014 kb on - strand, within ECD_03281 at 3431.016 kb on + strand, within ECD_03281 at 3431.017 kb on - strand, within ECD_03281 at 3431.017 kb on - strand, within ECD_03281 at 3431.067 kb on + strand at 3431.166 kb on + strand at 3431.172 kb on + strand at 3431.172 kb on + strand at 3431.360 kb on + strand, within ECD_03282 at 3431.361 kb on - strand, within ECD_03282 at 3431.361 kb on - strand, within ECD_03282 at 3431.361 kb on - strand, within ECD_03282 at 3431.366 kb on + strand, within ECD_03282 at 3431.366 kb on + strand, within ECD_03282 at 3431.367 kb on - strand, within ECD_03282 at 3431.381 kb on + strand, within ECD_03282 at 3431.489 kb on - strand, within ECD_03282 at 3431.489 kb on - strand, within ECD_03282 at 3431.553 kb on + strand, within ECD_03282 at 3431.554 kb on - strand, within ECD_03282 at 3431.554 kb on - strand, within ECD_03282 at 3431.580 kb on + strand, within ECD_03282 at 3431.580 kb on + strand, within ECD_03282 at 3431.581 kb on - strand, within ECD_03282 at 3431.584 kb on + strand, within ECD_03282 at 3431.584 kb on + strand, within ECD_03282 at 3431.585 kb on - strand, within ECD_03282 at 3431.715 kb on + strand, within ECD_03282 at 3431.809 kb on - strand, within ECD_03282 at 3431.809 kb on - strand, within ECD_03282 at 3431.809 kb on - strand, within ECD_03282 at 3431.832 kb on + strand, within ECD_03282 at 3431.833 kb on - strand, within ECD_03282 at 3431.833 kb on - strand, within ECD_03282 at 3431.833 kb on - strand, within ECD_03282 at 3431.833 kb on - strand, within ECD_03282 at 3431.836 kb on + strand, within ECD_03282 at 3431.843 kb on - strand, within ECD_03282 at 3431.939 kb on - strand, within ECD_03282 at 3431.977 kb on + strand, within ECD_03282 at 3431.977 kb on + strand, within ECD_03282 at 3431.977 kb on + strand, within ECD_03282 at 3431.978 kb on - strand, within ECD_03282 at 3432.026 kb on - strand, within ECD_03282 at 3432.034 kb on - strand, within ECD_03282 at 3432.045 kb on + strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.046 kb on - strand, within ECD_03282 at 3432.049 kb on + strand, within ECD_03282 at 3432.050 kb on - strand, within ECD_03282 at 3432.050 kb on - strand, within ECD_03282 at 3432.050 kb on - strand, within ECD_03282 at 3432.050 kb on - strand, within ECD_03282 at 3432.085 kb on + strand, within ECD_03282 at 3432.085 kb on + strand, within ECD_03282 at 3432.086 kb on - strand, within ECD_03282 at 3432.088 kb on - strand, within ECD_03282 at 3432.088 kb on - strand, within ECD_03282
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 3,428,758 - ECD_03280 0.60 +2.0 3,428,809 + ECD_03280 0.62 +0.4 3,428,810 - ECD_03280 0.62 -0.1 3,428,817 - ECD_03280 0.63 -0.1 3,428,872 + ECD_03280 0.65 -0.0 3,428,872 + ECD_03280 0.65 -0.3 3,428,873 - ECD_03280 0.65 -0.2 3,428,937 + ECD_03280 0.68 +1.3 3,428,937 + ECD_03280 0.68 +0.2 3,428,937 + ECD_03280 0.68 -0.2 3,428,997 - ECD_03280 0.70 -0.6 3,429,076 - ECD_03280 0.73 +0.8 3,429,167 + ECD_03280 0.77 +0.6 3,429,168 - ECD_03280 0.77 +0.8 3,429,168 - ECD_03280 0.77 -0.3 3,429,168 - ECD_03280 0.77 +0.7 3,429,170 - ECD_03280 0.77 +1.2 3,429,221 - ECD_03280 0.79 -0.0 3,429,221 - ECD_03280 0.79 -0.2 3,429,269 + ECD_03280 0.81 -0.2 3,429,270 - ECD_03280 0.81 +0.6 3,429,274 + ECD_03280 0.81 +0.6 3,429,411 + ECD_03280 0.87 +0.4 3,429,412 - ECD_03280 0.87 +0.2 3,429,438 + ECD_03280 0.88 +0.4 3,429,438 + ECD_03280 0.88 +0.1 3,429,439 - ECD_03280 0.88 +2.2 3,429,449 - ECD_03280 0.88 -0.8 3,429,559 - -0.4 3,429,620 + -0.4 3,429,621 - +0.7 3,429,651 - -0.2 3,429,664 + -0.3 3,429,664 + +0.6 3,429,664 + +0.1 3,429,665 - +1.0 3,429,672 - +0.6 3,429,712 + -0.6 3,429,712 + +1.2 3,429,712 + -0.2 3,429,713 - +0.6 3,429,713 - +1.2 3,429,713 - +0.3 3,429,716 + +5.6 3,429,716 + -1.1 3,429,716 + +0.6 3,429,731 + +1.0 3,429,731 + +0.7 3,429,731 + -0.8 3,429,733 + +0.8 3,429,733 + +3.2 3,429,733 + +0.0 3,429,734 - -0.6 3,429,751 + +0.7 3,429,751 + +0.8 3,429,752 - +0.3 3,429,766 + -2.6 3,429,767 - -0.1 3,429,803 + -0.6 3,429,804 - -0.9 3,429,865 - -0.7 3,429,865 - +0.6 3,429,888 + +0.5 3,429,908 + ECD_03281 0.11 -0.9 3,429,909 - ECD_03281 0.11 +3.6 3,430,019 - ECD_03281 0.19 +0.2 3,430,019 - ECD_03281 0.19 +0.1 3,430,019 - ECD_03281 0.19 +0.2 3,430,313 + ECD_03281 0.39 +0.2 3,430,325 + ECD_03281 0.40 -1.7 3,430,326 - ECD_03281 0.40 +1.0 3,430,326 - ECD_03281 0.40 -0.5 3,430,345 - ECD_03281 0.41 -0.8 3,430,407 + ECD_03281 0.46 -1.3 3,430,407 + ECD_03281 0.46 -1.7 3,430,408 - ECD_03281 0.46 +0.4 3,430,503 - ECD_03281 0.53 +1.0 3,430,508 - ECD_03281 0.53 +1.0 3,430,540 + ECD_03281 0.55 +1.1 3,430,540 + ECD_03281 0.55 +1.2 3,430,541 - ECD_03281 0.55 +0.3 3,430,560 - ECD_03281 0.56 +0.3 3,430,574 - ECD_03281 0.57 -0.9 3,430,574 - ECD_03281 0.57 +0.3 3,430,576 + ECD_03281 0.58 -0.4 3,430,675 + ECD_03281 0.65 +0.1 3,430,676 - ECD_03281 0.65 +0.2 3,430,690 + ECD_03281 0.66 -0.7 3,430,863 + ECD_03281 0.78 +0.1 3,430,863 + ECD_03281 0.78 +0.9 3,430,876 + ECD_03281 0.79 -0.0 3,430,877 - ECD_03281 0.79 +0.1 3,430,884 + ECD_03281 0.79 -2.0 3,430,884 + ECD_03281 0.79 -0.5 3,430,885 - ECD_03281 0.79 +1.0 3,430,885 - ECD_03281 0.79 +1.0 3,430,885 - ECD_03281 0.79 +1.6 3,430,885 - ECD_03281 0.79 +1.0 3,430,921 + ECD_03281 0.82 +1.1 3,430,921 + ECD_03281 0.82 +1.4 3,430,922 - ECD_03281 0.82 -0.5 3,430,946 - ECD_03281 0.83 +0.5 3,430,946 - ECD_03281 0.83 +0.4 3,430,948 - ECD_03281 0.84 +1.2 3,430,948 - ECD_03281 0.84 +0.6 3,430,948 - ECD_03281 0.84 +0.2 3,430,948 - ECD_03281 0.84 -0.5 3,430,948 - ECD_03281 0.84 +1.3 3,430,964 - ECD_03281 0.85 +1.5 3,430,964 - ECD_03281 0.85 +0.8 3,430,985 + ECD_03281 0.86 +0.6 3,430,985 + ECD_03281 0.86 -0.4 3,430,985 + ECD_03281 0.86 +0.5 3,430,985 + ECD_03281 0.86 +0.3 3,430,986 - ECD_03281 0.86 +0.2 3,430,986 - ECD_03281 0.86 -0.5 3,430,986 - ECD_03281 0.86 -0.2 3,430,986 - ECD_03281 0.86 -0.4 3,431,013 + ECD_03281 0.88 -1.7 3,431,014 - ECD_03281 0.88 +0.5 3,431,016 + ECD_03281 0.88 +1.3 3,431,017 - ECD_03281 0.88 +0.7 3,431,017 - ECD_03281 0.88 -0.5 3,431,067 + +0.1 3,431,166 + -0.1 3,431,172 + +0.2 3,431,172 + +0.9 3,431,360 + ECD_03282 0.14 +0.3 3,431,361 - ECD_03282 0.14 +0.2 3,431,361 - ECD_03282 0.14 -0.0 3,431,361 - ECD_03282 0.14 +0.2 3,431,366 + ECD_03282 0.14 +0.2 3,431,366 + ECD_03282 0.14 +0.2 3,431,367 - ECD_03282 0.14 +0.1 3,431,381 + ECD_03282 0.15 +0.7 3,431,489 - ECD_03282 0.24 +1.0 3,431,489 - ECD_03282 0.24 -0.6 3,431,553 + ECD_03282 0.29 +0.6 3,431,554 - ECD_03282 0.29 +0.5 3,431,554 - ECD_03282 0.29 +0.3 3,431,580 + ECD_03282 0.31 +0.2 3,431,580 + ECD_03282 0.31 +0.8 3,431,581 - ECD_03282 0.31 -0.3 3,431,584 + ECD_03282 0.31 +0.9 3,431,584 + ECD_03282 0.31 +0.5 3,431,585 - ECD_03282 0.31 +0.9 3,431,715 + ECD_03282 0.41 +0.7 3,431,809 - ECD_03282 0.48 -0.7 3,431,809 - ECD_03282 0.48 -0.2 3,431,809 - ECD_03282 0.48 +0.8 3,431,832 + ECD_03282 0.50 -0.6 3,431,833 - ECD_03282 0.50 -1.4 3,431,833 - ECD_03282 0.50 +0.6 3,431,833 - ECD_03282 0.50 -0.1 3,431,833 - ECD_03282 0.50 +0.4 3,431,836 + ECD_03282 0.50 -0.4 3,431,843 - ECD_03282 0.51 +0.6 3,431,939 - ECD_03282 0.58 +0.1 3,431,977 + ECD_03282 0.61 -0.6 3,431,977 + ECD_03282 0.61 -0.5 3,431,977 + ECD_03282 0.61 -1.0 3,431,978 - ECD_03282 0.61 +0.3 3,432,026 - ECD_03282 0.65 -0.4 3,432,034 - ECD_03282 0.66 +0.4 3,432,045 + ECD_03282 0.67 -0.6 3,432,046 - ECD_03282 0.67 +1.2 3,432,046 - ECD_03282 0.67 -0.0 3,432,046 - ECD_03282 0.67 +0.4 3,432,046 - ECD_03282 0.67 -0.4 3,432,046 - ECD_03282 0.67 +0.5 3,432,046 - ECD_03282 0.67 -0.1 3,432,049 + ECD_03282 0.67 +0.1 3,432,050 - ECD_03282 0.67 +2.0 3,432,050 - ECD_03282 0.67 -0.8 3,432,050 - ECD_03282 0.67 +0.5 3,432,050 - ECD_03282 0.67 -0.2 3,432,085 + ECD_03282 0.70 +0.8 3,432,085 + ECD_03282 0.70 +0.3 3,432,086 - ECD_03282 0.70 +1.3 3,432,088 - ECD_03282 0.70 +0.5 3,432,088 - ECD_03282 0.70 +0.1
Or see this region's nucleotide sequence