Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03272 and ECD_03273 are separated by 188 nucleotides ECD_03273 and ECD_03274 overlap by 19 nucleotides ECD_03274 and ECD_03275 are separated by 16 nucleotides
ECD_03272: ECD_03272 - RNA-splicing ligase, at 3,417,149 to 3,418,375
_03272
ECD_03273: ECD_03273 - sigma 54-dependent transcriptional regulator of rtcBA expression, at 3,418,564 to 3,420,162
_03273
ECD_03274: ECD_03274 - DNA-binding transcriptional repressor, at 3,420,144 to 3,420,902
_03274
ECD_03275: ECD_03275 - rhomboid intramembrane serine protease, at 3,420,919 to 3,421,749
_03275
Position (kb)
3418
3419
3420
3421 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3417.681 kb on + strand, within ECD_03272 at 3417.693 kb on + strand, within ECD_03272 at 3417.694 kb on - strand, within ECD_03272 at 3417.709 kb on + strand, within ECD_03272 at 3417.783 kb on + strand, within ECD_03272 at 3417.783 kb on + strand, within ECD_03272 at 3417.783 kb on + strand, within ECD_03272 at 3417.784 kb on - strand, within ECD_03272 at 3417.829 kb on + strand, within ECD_03272 at 3417.829 kb on + strand, within ECD_03272 at 3417.904 kb on + strand, within ECD_03272 at 3417.905 kb on - strand, within ECD_03272 at 3417.905 kb on - strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.906 kb on + strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3417.907 kb on - strand, within ECD_03272 at 3418.042 kb on + strand, within ECD_03272 at 3418.229 kb on + strand, within ECD_03272 at 3418.230 kb on - strand, within ECD_03272 at 3418.230 kb on - strand, within ECD_03272 at 3418.283 kb on - strand at 3418.548 kb on + strand at 3418.549 kb on - strand at 3418.556 kb on + strand at 3418.560 kb on + strand at 3418.560 kb on + strand at 3418.560 kb on + strand at 3418.561 kb on - strand at 3418.701 kb on - strand at 3418.727 kb on + strand, within ECD_03273 at 3418.728 kb on - strand, within ECD_03273 at 3418.886 kb on - strand, within ECD_03273 at 3418.889 kb on + strand, within ECD_03273 at 3418.890 kb on - strand, within ECD_03273 at 3418.899 kb on + strand, within ECD_03273 at 3418.973 kb on + strand, within ECD_03273 at 3418.974 kb on - strand, within ECD_03273 at 3419.045 kb on + strand, within ECD_03273 at 3419.053 kb on + strand, within ECD_03273 at 3419.351 kb on + strand, within ECD_03273 at 3419.351 kb on + strand, within ECD_03273 at 3419.351 kb on + strand, within ECD_03273 at 3419.352 kb on - strand, within ECD_03273 at 3419.605 kb on + strand, within ECD_03273 at 3419.664 kb on + strand, within ECD_03273 at 3419.665 kb on - strand, within ECD_03273 at 3419.674 kb on - strand, within ECD_03273 at 3419.674 kb on - strand, within ECD_03273 at 3419.683 kb on + strand, within ECD_03273 at 3419.683 kb on + strand, within ECD_03273 at 3419.684 kb on - strand, within ECD_03273 at 3419.730 kb on + strand, within ECD_03273 at 3419.896 kb on + strand, within ECD_03273 at 3419.898 kb on + strand, within ECD_03273 at 3419.928 kb on + strand, within ECD_03273 at 3419.976 kb on + strand, within ECD_03273 at 3419.977 kb on - strand, within ECD_03273 at 3420.000 kb on + strand, within ECD_03273 at 3420.000 kb on + strand, within ECD_03273 at 3420.103 kb on + strand at 3420.104 kb on - strand at 3420.164 kb on + strand at 3420.164 kb on + strand at 3420.164 kb on + strand at 3420.164 kb on + strand at 3420.217 kb on + strand at 3420.218 kb on - strand at 3420.228 kb on + strand, within ECD_03274 at 3420.228 kb on + strand, within ECD_03274 at 3420.228 kb on + strand, within ECD_03274 at 3420.229 kb on - strand, within ECD_03274 at 3420.229 kb on - strand, within ECD_03274 at 3420.229 kb on - strand, within ECD_03274 at 3420.229 kb on - strand, within ECD_03274 at 3420.297 kb on - strand, within ECD_03274 at 3420.297 kb on - strand, within ECD_03274 at 3420.317 kb on + strand, within ECD_03274 at 3420.426 kb on - strand, within ECD_03274 at 3420.472 kb on - strand, within ECD_03274 at 3420.472 kb on - strand, within ECD_03274 at 3420.847 kb on + strand at 3420.847 kb on + strand at 3420.847 kb on + strand at 3420.848 kb on - strand at 3420.848 kb on - strand at 3420.848 kb on - strand at 3420.875 kb on + strand at 3420.876 kb on - strand at 3420.876 kb on - strand at 3421.059 kb on + strand, within ECD_03275 at 3421.080 kb on - strand, within ECD_03275
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 3,417,681 + ECD_03272 0.43 +1.6 3,417,693 + ECD_03272 0.44 +1.2 3,417,694 - ECD_03272 0.44 -0.1 3,417,709 + ECD_03272 0.46 +1.0 3,417,783 + ECD_03272 0.52 +0.7 3,417,783 + ECD_03272 0.52 +0.5 3,417,783 + ECD_03272 0.52 +0.4 3,417,784 - ECD_03272 0.52 -0.7 3,417,829 + ECD_03272 0.55 +1.4 3,417,829 + ECD_03272 0.55 +0.0 3,417,904 + ECD_03272 0.62 -0.4 3,417,905 - ECD_03272 0.62 +0.6 3,417,905 - ECD_03272 0.62 +0.3 3,417,906 + ECD_03272 0.62 -0.9 3,417,906 + ECD_03272 0.62 +1.5 3,417,906 + ECD_03272 0.62 +0.5 3,417,906 + ECD_03272 0.62 +0.2 3,417,907 - ECD_03272 0.62 +0.6 3,417,907 - ECD_03272 0.62 -0.1 3,417,907 - ECD_03272 0.62 +0.1 3,417,907 - ECD_03272 0.62 +0.5 3,417,907 - ECD_03272 0.62 +0.1 3,417,907 - ECD_03272 0.62 -0.7 3,418,042 + ECD_03272 0.73 -0.0 3,418,229 + ECD_03272 0.88 -0.1 3,418,230 - ECD_03272 0.88 -1.1 3,418,230 - ECD_03272 0.88 +0.9 3,418,283 - +0.1 3,418,548 + +0.3 3,418,549 - -0.3 3,418,556 + +1.8 3,418,560 + -0.0 3,418,560 + +1.4 3,418,560 + -0.2 3,418,561 - -0.3 3,418,701 - +0.9 3,418,727 + ECD_03273 0.10 +0.6 3,418,728 - ECD_03273 0.10 -0.4 3,418,886 - ECD_03273 0.20 +1.1 3,418,889 + ECD_03273 0.20 +0.6 3,418,890 - ECD_03273 0.20 +0.1 3,418,899 + ECD_03273 0.21 +0.6 3,418,973 + ECD_03273 0.26 +2.1 3,418,974 - ECD_03273 0.26 +0.4 3,419,045 + ECD_03273 0.30 +0.8 3,419,053 + ECD_03273 0.31 +0.7 3,419,351 + ECD_03273 0.49 +1.4 3,419,351 + ECD_03273 0.49 +1.7 3,419,351 + ECD_03273 0.49 -0.3 3,419,352 - ECD_03273 0.49 -1.4 3,419,605 + ECD_03273 0.65 +0.8 3,419,664 + ECD_03273 0.69 +1.2 3,419,665 - ECD_03273 0.69 +0.6 3,419,674 - ECD_03273 0.69 -0.2 3,419,674 - ECD_03273 0.69 +1.1 3,419,683 + ECD_03273 0.70 -0.7 3,419,683 + ECD_03273 0.70 +0.8 3,419,684 - ECD_03273 0.70 +0.6 3,419,730 + ECD_03273 0.73 -0.2 3,419,896 + ECD_03273 0.83 +1.1 3,419,898 + ECD_03273 0.83 -1.4 3,419,928 + ECD_03273 0.85 -0.1 3,419,976 + ECD_03273 0.88 +0.5 3,419,977 - ECD_03273 0.88 +1.3 3,420,000 + ECD_03273 0.90 -2.0 3,420,000 + ECD_03273 0.90 +0.3 3,420,103 + -1.0 3,420,104 - +0.9 3,420,164 + +0.5 3,420,164 + +1.3 3,420,164 + +0.4 3,420,164 + +1.3 3,420,217 + -0.0 3,420,218 - +0.7 3,420,228 + ECD_03274 0.11 +1.1 3,420,228 + ECD_03274 0.11 +1.3 3,420,228 + ECD_03274 0.11 +2.4 3,420,229 - ECD_03274 0.11 +0.9 3,420,229 - ECD_03274 0.11 +1.6 3,420,229 - ECD_03274 0.11 +0.9 3,420,229 - ECD_03274 0.11 +0.1 3,420,297 - ECD_03274 0.20 +1.3 3,420,297 - ECD_03274 0.20 +0.9 3,420,317 + ECD_03274 0.23 +0.6 3,420,426 - ECD_03274 0.37 +0.9 3,420,472 - ECD_03274 0.43 +1.3 3,420,472 - ECD_03274 0.43 +0.8 3,420,847 + -0.6 3,420,847 + +0.3 3,420,847 + +1.9 3,420,848 - +0.9 3,420,848 - +1.4 3,420,848 - +0.1 3,420,875 + +0.7 3,420,876 - +0.6 3,420,876 - +0.8 3,421,059 + ECD_03275 0.17 -0.0 3,421,080 - ECD_03275 0.19 +0.9
Or see this region's nucleotide sequence