Strain Fitness in Escherichia coli BL21 around ECD_03132

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03130 and ECD_03131 overlap by 25 nucleotidesECD_03131 and ECD_03132 overlap by 4 nucleotidesECD_03132 and ECD_03133 are separated by 4 nucleotidesECD_03133 and ECD_03134 are separated by 4 nucleotides ECD_03130: ECD_03130 - bacterial transferase hexapeptide domain protein, at 3,290,406 to 3,290,960 _03130 ECD_03131: ECD_03131 - DUF1488 family protein, at 3,290,936 to 3,291,193 _03131 ECD_03132: ECD_03132 - dehydroshikimate reductase, NAD(P)-binding, at 3,291,190 to 3,292,008 _03132 ECD_03133: ECD_03133 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, threonine-dependent ADP-forming ATPase, at 3,292,013 to 3,292,585 _03133 ECD_03134: ECD_03134 - ssDNA-binding protein, function unknown, at 3,292,590 to 3,293,132 _03134 Position (kb) 3291 3292 3293Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3290.231 kb on - strandat 3290.231 kb on - strandat 3290.338 kb on + strandat 3290.339 kb on - strandat 3290.390 kb on + strandat 3290.405 kb on + strandat 3290.405 kb on + strandat 3290.405 kb on + strandat 3290.405 kb on + strandat 3290.406 kb on - strandat 3290.419 kb on + strandat 3290.551 kb on + strand, within ECD_03130at 3290.551 kb on + strand, within ECD_03130at 3290.551 kb on + strand, within ECD_03130at 3290.551 kb on + strand, within ECD_03130at 3290.552 kb on - strand, within ECD_03130at 3290.552 kb on - strand, within ECD_03130at 3290.552 kb on - strand, within ECD_03130at 3290.552 kb on - strand, within ECD_03130at 3290.552 kb on - strand, within ECD_03130at 3290.556 kb on + strand, within ECD_03130at 3290.556 kb on + strand, within ECD_03130at 3290.556 kb on + strand, within ECD_03130at 3290.556 kb on + strand, within ECD_03130at 3290.556 kb on + strand, within ECD_03130at 3290.556 kb on + strand, within ECD_03130at 3290.557 kb on - strand, within ECD_03130at 3290.557 kb on - strand, within ECD_03130at 3290.557 kb on - strand, within ECD_03130at 3290.557 kb on - strand, within ECD_03130at 3290.560 kb on + strand, within ECD_03130at 3290.560 kb on + strand, within ECD_03130at 3290.597 kb on + strand, within ECD_03130at 3290.597 kb on + strand, within ECD_03130at 3290.598 kb on - strand, within ECD_03130at 3290.616 kb on - strand, within ECD_03130at 3290.626 kb on - strand, within ECD_03130at 3290.626 kb on - strand, within ECD_03130at 3290.756 kb on - strand, within ECD_03130at 3290.758 kb on + strand, within ECD_03130at 3290.758 kb on + strand, within ECD_03130at 3290.759 kb on - strand, within ECD_03130at 3290.759 kb on - strand, within ECD_03130at 3290.786 kb on + strand, within ECD_03130at 3290.829 kb on + strand, within ECD_03130at 3290.830 kb on - strand, within ECD_03130at 3290.892 kb on + strand, within ECD_03130at 3290.907 kb on + strandat 3290.908 kb on - strandat 3291.052 kb on + strand, within ECD_03131at 3291.110 kb on - strand, within ECD_03131at 3291.110 kb on - strand, within ECD_03131at 3291.135 kb on - strand, within ECD_03131at 3291.220 kb on + strandat 3291.221 kb on - strandat 3291.222 kb on + strandat 3291.232 kb on + strandat 3291.296 kb on - strand, within ECD_03132at 3291.309 kb on + strand, within ECD_03132at 3291.565 kb on - strand, within ECD_03132at 3291.569 kb on - strand, within ECD_03132at 3291.998 kb on + strandat 3291.999 kb on - strandat 3291.999 kb on - strandat 3291.999 kb on - strandat 3291.999 kb on - strandat 3291.999 kb on - strandat 3292.009 kb on + strandat 3292.010 kb on - strandat 3292.010 kb on - strandat 3292.010 kb on - strandat 3292.623 kb on - strandat 3292.704 kb on + strand, within ECD_03134at 3292.705 kb on - strand, within ECD_03134at 3292.821 kb on - strand, within ECD_03134at 3292.821 kb on - strand, within ECD_03134at 3292.821 kb on - strand, within ECD_03134at 3292.821 kb on - strand, within ECD_03134at 3292.857 kb on - strand, within ECD_03134at 3292.890 kb on - strand, within ECD_03134at 3292.896 kb on - strand, within ECD_03134at 3292.914 kb on + strand, within ECD_03134at 3292.915 kb on - strand, within ECD_03134at 3292.915 kb on - strand, within ECD_03134at 3292.915 kb on - strand, within ECD_03134at 3292.970 kb on + strand, within ECD_03134at 3292.971 kb on - strand, within ECD_03134at 3292.971 kb on - strand, within ECD_03134

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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3,290,231 - +0.7
3,290,231 - +1.1
3,290,338 + -0.2
3,290,339 - +0.7
3,290,390 + -0.2
3,290,405 + +0.8
3,290,405 + +0.6
3,290,405 + +0.8
3,290,405 + -0.3
3,290,406 - +0.0
3,290,419 + -0.2
3,290,551 + ECD_03130 0.26 -0.4
3,290,551 + ECD_03130 0.26 +0.3
3,290,551 + ECD_03130 0.26 -0.0
3,290,551 + ECD_03130 0.26 -0.6
3,290,552 - ECD_03130 0.26 +0.1
3,290,552 - ECD_03130 0.26 -3.1
3,290,552 - ECD_03130 0.26 +1.0
3,290,552 - ECD_03130 0.26 -0.4
3,290,552 - ECD_03130 0.26 -0.5
3,290,556 + ECD_03130 0.27 +0.2
3,290,556 + ECD_03130 0.27 +0.4
3,290,556 + ECD_03130 0.27 +2.7
3,290,556 + ECD_03130 0.27 +0.4
3,290,556 + ECD_03130 0.27 +1.2
3,290,556 + ECD_03130 0.27 -1.6
3,290,557 - ECD_03130 0.27 +0.0
3,290,557 - ECD_03130 0.27 +0.1
3,290,557 - ECD_03130 0.27 -0.8
3,290,557 - ECD_03130 0.27 -0.7
3,290,560 + ECD_03130 0.28 -1.2
3,290,560 + ECD_03130 0.28 +1.4
3,290,597 + ECD_03130 0.34 +0.0
3,290,597 + ECD_03130 0.34 +0.4
3,290,598 - ECD_03130 0.35 +0.7
3,290,616 - ECD_03130 0.38 +0.8
3,290,626 - ECD_03130 0.40 +0.4
3,290,626 - ECD_03130 0.40 +0.5
3,290,756 - ECD_03130 0.63 +1.0
3,290,758 + ECD_03130 0.63 +0.2
3,290,758 + ECD_03130 0.63 -0.2
3,290,759 - ECD_03130 0.64 +0.0
3,290,759 - ECD_03130 0.64 +0.4
3,290,786 + ECD_03130 0.68 -0.0
3,290,829 + ECD_03130 0.76 -0.1
3,290,830 - ECD_03130 0.76 +0.3
3,290,892 + ECD_03130 0.88 +0.3
3,290,907 + -0.3
3,290,908 - -0.7
3,291,052 + ECD_03131 0.45 +3.2
3,291,110 - ECD_03131 0.67 +0.9
3,291,110 - ECD_03131 0.67 -0.7
3,291,135 - ECD_03131 0.77 +0.6
3,291,220 + +1.7
3,291,221 - +0.2
3,291,222 + +1.0
3,291,232 + +1.9
3,291,296 - ECD_03132 0.13 +2.3
3,291,309 + ECD_03132 0.15 +2.8
3,291,565 - ECD_03132 0.46 +2.4
3,291,569 - ECD_03132 0.46 +2.3
3,291,998 + +1.7
3,291,999 - +0.4
3,291,999 - +2.7
3,291,999 - +0.7
3,291,999 - +0.6
3,291,999 - +0.8
3,292,009 + +0.8
3,292,010 - +1.1
3,292,010 - -0.2
3,292,010 - -0.5
3,292,623 - -0.8
3,292,704 + ECD_03134 0.21 -1.6
3,292,705 - ECD_03134 0.21 -0.5
3,292,821 - ECD_03134 0.43 +0.4
3,292,821 - ECD_03134 0.43 -0.9
3,292,821 - ECD_03134 0.43 -0.3
3,292,821 - ECD_03134 0.43 -2.4
3,292,857 - ECD_03134 0.49 -3.0
3,292,890 - ECD_03134 0.55 -0.3
3,292,896 - ECD_03134 0.56 -0.6
3,292,914 + ECD_03134 0.60 -0.6
3,292,915 - ECD_03134 0.60 -1.5
3,292,915 - ECD_03134 0.60 -1.9
3,292,915 - ECD_03134 0.60 -1.7
3,292,970 + ECD_03134 0.70 -0.2
3,292,971 - ECD_03134 0.70 -2.6
3,292,971 - ECD_03134 0.70 -1.5

Or see this region's nucleotide sequence