Strain Fitness in Escherichia coli BL21 around ECD_03033

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03031 and ECD_03032 are separated by 246 nucleotidesECD_03032 and ECD_03033 are separated by 148 nucleotidesECD_03033 and ECD_03034 overlap by 1 nucleotidesECD_03034 and ECD_03035 are separated by 163 nucleotides ECD_03031: ECD_03031 - polynucleotide phosphorylase/polyadenylase, at 3,177,532 to 3,179,667 _03031 ECD_03032: ECD_03032 - 30S ribosomal subunit protein S15, at 3,179,914 to 3,180,183 _03032 ECD_03033: ECD_03033 - tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase, at 3,180,332 to 3,181,276 _03033 ECD_03034: ECD_03034 - 30s ribosome binding factor, at 3,181,276 to 3,181,677 _03034 ECD_03035: ECD_03035 - translation initiation factor IF-2, at 3,181,841 to 3,184,513 _03035 Position (kb) 3180 3181 3182Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3179.470 kb on - strandat 3179.637 kb on - strandat 3179.646 kb on + strandat 3179.647 kb on - strandat 3179.670 kb on + strandat 3179.671 kb on - strandat 3179.671 kb on - strandat 3179.716 kb on - strandat 3179.770 kb on - strandat 3179.826 kb on - strandat 3179.835 kb on - strandat 3179.835 kb on - strandat 3179.840 kb on - strandat 3180.251 kb on - strandat 3180.292 kb on - strandat 3180.333 kb on + strandat 3180.464 kb on - strand, within ECD_03033at 3180.490 kb on - strand, within ECD_03033at 3180.654 kb on + strand, within ECD_03033at 3180.659 kb on - strand, within ECD_03033at 3180.659 kb on - strand, within ECD_03033at 3180.663 kb on - strand, within ECD_03033at 3180.663 kb on - strand, within ECD_03033at 3180.682 kb on - strand, within ECD_03033at 3180.685 kb on + strand, within ECD_03033at 3180.685 kb on + strand, within ECD_03033at 3180.685 kb on + strand, within ECD_03033at 3180.685 kb on + strand, within ECD_03033at 3180.686 kb on - strand, within ECD_03033at 3180.686 kb on - strand, within ECD_03033at 3180.686 kb on - strand, within ECD_03033at 3180.741 kb on + strand, within ECD_03033at 3180.742 kb on - strand, within ECD_03033at 3180.742 kb on - strand, within ECD_03033at 3180.742 kb on - strand, within ECD_03033at 3180.742 kb on - strand, within ECD_03033at 3180.886 kb on - strand, within ECD_03033at 3180.901 kb on - strand, within ECD_03033at 3181.168 kb on + strand, within ECD_03033at 3181.169 kb on - strand, within ECD_03033at 3181.169 kb on - strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.170 kb on + strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.171 kb on - strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.172 kb on + strand, within ECD_03033at 3181.173 kb on - strand, within ECD_03033at 3181.173 kb on - strand, within ECD_03033at 3181.174 kb on + strand, within ECD_03033at 3181.174 kb on + strand, within ECD_03033at 3181.174 kb on + strand, within ECD_03033at 3181.174 kb on + strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.175 kb on - strand, within ECD_03033at 3181.210 kb on + strandat 3181.211 kb on - strandat 3181.278 kb on - strandat 3181.278 kb on - strandat 3181.278 kb on - strandat 3181.762 kb on - strandat 3181.853 kb on - strandat 3181.853 kb on - strandat 3181.853 kb on - strandat 3181.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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3,179,470 - -0.7
3,179,637 - -1.3
3,179,646 + -0.5
3,179,647 - -2.3
3,179,670 + -0.6
3,179,671 - -2.3
3,179,671 - -1.7
3,179,716 - +0.3
3,179,770 - -0.9
3,179,826 - -1.7
3,179,835 - -1.2
3,179,835 - -0.1
3,179,840 - +0.8
3,180,251 - +1.9
3,180,292 - +2.1
3,180,333 + +0.2
3,180,464 - ECD_03033 0.14 +2.3
3,180,490 - ECD_03033 0.17 +0.9
3,180,654 + ECD_03033 0.34 +3.1
3,180,659 - ECD_03033 0.35 +2.4
3,180,659 - ECD_03033 0.35 +2.6
3,180,663 - ECD_03033 0.35 +1.5
3,180,663 - ECD_03033 0.35 +1.5
3,180,682 - ECD_03033 0.37 +4.4
3,180,685 + ECD_03033 0.37 +2.8
3,180,685 + ECD_03033 0.37 +3.0
3,180,685 + ECD_03033 0.37 +1.9
3,180,685 + ECD_03033 0.37 +3.2
3,180,686 - ECD_03033 0.37 +3.0
3,180,686 - ECD_03033 0.37 +3.3
3,180,686 - ECD_03033 0.37 +1.9
3,180,741 + ECD_03033 0.43 +1.5
3,180,742 - ECD_03033 0.43 +3.4
3,180,742 - ECD_03033 0.43 +2.9
3,180,742 - ECD_03033 0.43 +2.8
3,180,742 - ECD_03033 0.43 +2.9
3,180,886 - ECD_03033 0.59 +3.2
3,180,901 - ECD_03033 0.60 +2.2
3,181,168 + ECD_03033 0.88 +1.6
3,181,169 - ECD_03033 0.89 +3.1
3,181,169 - ECD_03033 0.89 +2.5
3,181,170 + ECD_03033 0.89 +1.8
3,181,170 + ECD_03033 0.89 +2.4
3,181,170 + ECD_03033 0.89 +2.8
3,181,170 + ECD_03033 0.89 +2.5
3,181,170 + ECD_03033 0.89 +3.0
3,181,170 + ECD_03033 0.89 +2.9
3,181,170 + ECD_03033 0.89 +3.2
3,181,170 + ECD_03033 0.89 +3.1
3,181,171 - ECD_03033 0.89 +4.0
3,181,171 - ECD_03033 0.89 +2.4
3,181,171 - ECD_03033 0.89 +2.4
3,181,171 - ECD_03033 0.89 +2.9
3,181,171 - ECD_03033 0.89 +2.5
3,181,171 - ECD_03033 0.89 +2.5
3,181,171 - ECD_03033 0.89 +3.1
3,181,171 - ECD_03033 0.89 +3.0
3,181,172 + ECD_03033 0.89 +2.2
3,181,172 + ECD_03033 0.89 +2.2
3,181,172 + ECD_03033 0.89 +3.3
3,181,172 + ECD_03033 0.89 +3.1
3,181,172 + ECD_03033 0.89 +2.5
3,181,172 + ECD_03033 0.89 +1.2
3,181,172 + ECD_03033 0.89 +2.0
3,181,173 - ECD_03033 0.89 +3.4
3,181,173 - ECD_03033 0.89 +2.6
3,181,174 + ECD_03033 0.89 +2.4
3,181,174 + ECD_03033 0.89 +2.0
3,181,174 + ECD_03033 0.89 +3.2
3,181,174 + ECD_03033 0.89 +2.6
3,181,175 - ECD_03033 0.89 +1.4
3,181,175 - ECD_03033 0.89 +3.0
3,181,175 - ECD_03033 0.89 +2.3
3,181,175 - ECD_03033 0.89 +3.5
3,181,175 - ECD_03033 0.89 +3.7
3,181,175 - ECD_03033 0.89 +4.6
3,181,210 + +1.9
3,181,211 - +2.9
3,181,278 - +2.2
3,181,278 - +2.0
3,181,278 - +2.1
3,181,762 - -0.1
3,181,853 - +1.8
3,181,853 - +2.9
3,181,853 - +3.1
3,181,853 - +2.2

Or see this region's nucleotide sequence