Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03031 and ECD_03032 are separated by 246 nucleotides ECD_03032 and ECD_03033 are separated by 148 nucleotides ECD_03033 and ECD_03034 overlap by 1 nucleotides ECD_03034 and ECD_03035 are separated by 163 nucleotides
ECD_03031: ECD_03031 - polynucleotide phosphorylase/polyadenylase, at 3,177,532 to 3,179,667
_03031
ECD_03032: ECD_03032 - 30S ribosomal subunit protein S15, at 3,179,914 to 3,180,183
_03032
ECD_03033: ECD_03033 - tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase, at 3,180,332 to 3,181,276
_03033
ECD_03034: ECD_03034 - 30s ribosome binding factor, at 3,181,276 to 3,181,677
_03034
ECD_03035: ECD_03035 - translation initiation factor IF-2, at 3,181,841 to 3,184,513
_03035
Position (kb)
3180
3181
3182 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3179.470 kb on - strand at 3179.637 kb on - strand at 3179.646 kb on + strand at 3179.647 kb on - strand at 3179.670 kb on + strand at 3179.671 kb on - strand at 3179.671 kb on - strand at 3179.716 kb on - strand at 3179.770 kb on - strand at 3179.826 kb on - strand at 3179.835 kb on - strand at 3179.835 kb on - strand at 3179.840 kb on - strand at 3180.251 kb on - strand at 3180.292 kb on - strand at 3180.333 kb on + strand at 3180.464 kb on - strand, within ECD_03033 at 3180.490 kb on - strand, within ECD_03033 at 3180.654 kb on + strand, within ECD_03033 at 3180.659 kb on - strand, within ECD_03033 at 3180.659 kb on - strand, within ECD_03033 at 3180.663 kb on - strand, within ECD_03033 at 3180.663 kb on - strand, within ECD_03033 at 3180.682 kb on - strand, within ECD_03033 at 3180.685 kb on + strand, within ECD_03033 at 3180.685 kb on + strand, within ECD_03033 at 3180.685 kb on + strand, within ECD_03033 at 3180.685 kb on + strand, within ECD_03033 at 3180.686 kb on - strand, within ECD_03033 at 3180.686 kb on - strand, within ECD_03033 at 3180.686 kb on - strand, within ECD_03033 at 3180.741 kb on + strand, within ECD_03033 at 3180.742 kb on - strand, within ECD_03033 at 3180.742 kb on - strand, within ECD_03033 at 3180.742 kb on - strand, within ECD_03033 at 3180.742 kb on - strand, within ECD_03033 at 3180.886 kb on - strand, within ECD_03033 at 3180.901 kb on - strand, within ECD_03033 at 3181.168 kb on + strand, within ECD_03033 at 3181.169 kb on - strand, within ECD_03033 at 3181.169 kb on - strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.173 kb on - strand, within ECD_03033 at 3181.173 kb on - strand, within ECD_03033 at 3181.174 kb on + strand, within ECD_03033 at 3181.174 kb on + strand, within ECD_03033 at 3181.174 kb on + strand, within ECD_03033 at 3181.174 kb on + strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.210 kb on + strand at 3181.211 kb on - strand at 3181.278 kb on - strand at 3181.278 kb on - strand at 3181.278 kb on - strand at 3181.762 kb on - strand at 3181.853 kb on - strand at 3181.853 kb on - strand at 3181.853 kb on - strand at 3181.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 3,179,470 - -0.7 3,179,637 - -1.3 3,179,646 + -0.5 3,179,647 - -2.3 3,179,670 + -0.6 3,179,671 - -2.3 3,179,671 - -1.7 3,179,716 - +0.3 3,179,770 - -0.9 3,179,826 - -1.7 3,179,835 - -1.2 3,179,835 - -0.1 3,179,840 - +0.8 3,180,251 - +1.9 3,180,292 - +2.1 3,180,333 + +0.2 3,180,464 - ECD_03033 0.14 +2.3 3,180,490 - ECD_03033 0.17 +0.9 3,180,654 + ECD_03033 0.34 +3.1 3,180,659 - ECD_03033 0.35 +2.4 3,180,659 - ECD_03033 0.35 +2.6 3,180,663 - ECD_03033 0.35 +1.5 3,180,663 - ECD_03033 0.35 +1.5 3,180,682 - ECD_03033 0.37 +4.4 3,180,685 + ECD_03033 0.37 +2.8 3,180,685 + ECD_03033 0.37 +3.0 3,180,685 + ECD_03033 0.37 +1.9 3,180,685 + ECD_03033 0.37 +3.2 3,180,686 - ECD_03033 0.37 +3.0 3,180,686 - ECD_03033 0.37 +3.3 3,180,686 - ECD_03033 0.37 +1.9 3,180,741 + ECD_03033 0.43 +1.5 3,180,742 - ECD_03033 0.43 +3.4 3,180,742 - ECD_03033 0.43 +2.9 3,180,742 - ECD_03033 0.43 +2.8 3,180,742 - ECD_03033 0.43 +2.9 3,180,886 - ECD_03033 0.59 +3.2 3,180,901 - ECD_03033 0.60 +2.2 3,181,168 + ECD_03033 0.88 +1.6 3,181,169 - ECD_03033 0.89 +3.1 3,181,169 - ECD_03033 0.89 +2.5 3,181,170 + ECD_03033 0.89 +1.8 3,181,170 + ECD_03033 0.89 +2.4 3,181,170 + ECD_03033 0.89 +2.8 3,181,170 + ECD_03033 0.89 +2.5 3,181,170 + ECD_03033 0.89 +3.0 3,181,170 + ECD_03033 0.89 +2.9 3,181,170 + ECD_03033 0.89 +3.2 3,181,170 + ECD_03033 0.89 +3.1 3,181,171 - ECD_03033 0.89 +4.0 3,181,171 - ECD_03033 0.89 +2.4 3,181,171 - ECD_03033 0.89 +2.4 3,181,171 - ECD_03033 0.89 +2.9 3,181,171 - ECD_03033 0.89 +2.5 3,181,171 - ECD_03033 0.89 +2.5 3,181,171 - ECD_03033 0.89 +3.1 3,181,171 - ECD_03033 0.89 +3.0 3,181,172 + ECD_03033 0.89 +2.2 3,181,172 + ECD_03033 0.89 +2.2 3,181,172 + ECD_03033 0.89 +3.3 3,181,172 + ECD_03033 0.89 +3.1 3,181,172 + ECD_03033 0.89 +2.5 3,181,172 + ECD_03033 0.89 +1.2 3,181,172 + ECD_03033 0.89 +2.0 3,181,173 - ECD_03033 0.89 +3.4 3,181,173 - ECD_03033 0.89 +2.6 3,181,174 + ECD_03033 0.89 +2.4 3,181,174 + ECD_03033 0.89 +2.0 3,181,174 + ECD_03033 0.89 +3.2 3,181,174 + ECD_03033 0.89 +2.6 3,181,175 - ECD_03033 0.89 +1.4 3,181,175 - ECD_03033 0.89 +3.0 3,181,175 - ECD_03033 0.89 +2.3 3,181,175 - ECD_03033 0.89 +3.5 3,181,175 - ECD_03033 0.89 +3.7 3,181,175 - ECD_03033 0.89 +4.6 3,181,210 + +1.9 3,181,211 - +2.9 3,181,278 - +2.2 3,181,278 - +2.0 3,181,278 - +2.1 3,181,762 - -0.1 3,181,853 - +1.8 3,181,853 - +2.9 3,181,853 - +3.1 3,181,853 - +2.2
Or see this region's nucleotide sequence