Strain Fitness in Escherichia coli BL21 around ECD_02664

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02663 and ECD_02664 are separated by 238 nucleotidesECD_02664 and ECD_t00051 are separated by 208 nucleotidesECD_t00051 and ECD_t00052 are separated by 33 nucleotidesECD_t00052 and ECD_t00053 are separated by 33 nucleotidesECD_t00053 and ECD_02665 are separated by 73 nucleotides ECD_02663: ECD_02663 - tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA, at 2,783,316 to 2,784,122 _02663 ECD_02664: ECD_02664 - membrane-bound lytic murein transglycosylase A, at 2,784,361 to 2,785,458 _02664 ECD_t00051: ECD_t00051 - tRNA-Met, at 2,785,667 to 2,785,743 _t00051 ECD_t00052: ECD_t00052 - tRNA-Met, at 2,785,777 to 2,785,853 _t00052 ECD_t00053: ECD_t00053 - tRNA-Met, at 2,785,887 to 2,785,963 _t00053 ECD_02665: ECD_02665 - N-acetylmuramoyl-L-alanine amidase, at 2,786,037 to 2,787,290 _02665 Position (kb) 2784 2785 2786Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2783.489 kb on - strand, within ECD_02663at 2783.505 kb on - strand, within ECD_02663at 2783.505 kb on - strand, within ECD_02663at 2783.538 kb on - strand, within ECD_02663at 2783.687 kb on + strand, within ECD_02663at 2783.701 kb on + strand, within ECD_02663at 2783.702 kb on - strand, within ECD_02663at 2783.702 kb on - strand, within ECD_02663at 2783.727 kb on + strand, within ECD_02663at 2783.728 kb on - strand, within ECD_02663at 2783.752 kb on + strand, within ECD_02663at 2783.753 kb on - strand, within ECD_02663at 2783.759 kb on - strand, within ECD_02663at 2783.771 kb on + strand, within ECD_02663at 2783.771 kb on + strand, within ECD_02663at 2783.772 kb on - strand, within ECD_02663at 2783.772 kb on - strand, within ECD_02663at 2783.772 kb on - strand, within ECD_02663at 2783.772 kb on - strand, within ECD_02663at 2783.772 kb on - strand, within ECD_02663at 2783.772 kb on - strand, within ECD_02663at 2783.772 kb on - strand, within ECD_02663at 2783.772 kb on - strand, within ECD_02663at 2783.772 kb on - strand, within ECD_02663at 2783.772 kb on - strand, within ECD_02663at 2783.773 kb on + strand, within ECD_02663at 2783.773 kb on + strand, within ECD_02663at 2783.774 kb on - strand, within ECD_02663at 2783.774 kb on - strand, within ECD_02663at 2783.774 kb on - strand, within ECD_02663at 2783.774 kb on - strand, within ECD_02663at 2783.782 kb on - strand, within ECD_02663at 2783.818 kb on - strand, within ECD_02663at 2783.834 kb on + strand, within ECD_02663at 2783.847 kb on - strand, within ECD_02663at 2783.859 kb on - strand, within ECD_02663at 2783.916 kb on - strand, within ECD_02663at 2783.916 kb on - strand, within ECD_02663at 2784.026 kb on + strand, within ECD_02663at 2784.026 kb on + strand, within ECD_02663at 2784.027 kb on - strand, within ECD_02663at 2784.027 kb on - strand, within ECD_02663at 2784.027 kb on - strand, within ECD_02663at 2784.027 kb on - strand, within ECD_02663at 2784.064 kb on + strandat 2784.065 kb on - strandat 2784.107 kb on + strandat 2784.108 kb on - strandat 2784.108 kb on - strandat 2784.108 kb on - strandat 2784.108 kb on - strandat 2784.108 kb on - strandat 2784.112 kb on - strandat 2784.112 kb on - strandat 2784.112 kb on - strandat 2784.122 kb on + strandat 2784.122 kb on + strandat 2784.122 kb on + strandat 2784.122 kb on + strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.123 kb on - strandat 2784.136 kb on + strandat 2784.171 kb on + strandat 2784.194 kb on - strandat 2784.202 kb on + strandat 2784.203 kb on - strandat 2784.203 kb on - strandat 2784.203 kb on - strandat 2784.203 kb on - strandat 2784.206 kb on + strandat 2784.206 kb on + strandat 2784.207 kb on - strandat 2784.219 kb on - strandat 2784.289 kb on + strandat 2784.296 kb on + strandat 2784.330 kb on + strandat 2784.331 kb on - strandat 2784.331 kb on - strandat 2784.336 kb on + strandat 2784.354 kb on + strandat 2784.355 kb on - strandat 2784.355 kb on - strandat 2784.355 kb on - strandat 2784.355 kb on - strandat 2784.428 kb on + strandat 2784.429 kb on - strandat 2784.429 kb on - strandat 2784.429 kb on - strandat 2784.470 kb on + strandat 2784.470 kb on + strandat 2784.470 kb on + strandat 2784.470 kb on + strandat 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.471 kb on - strand, within ECD_02664at 2784.536 kb on + strand, within ECD_02664at 2784.546 kb on + strand, within ECD_02664at 2784.559 kb on - strand, within ECD_02664at 2784.562 kb on - strand, within ECD_02664at 2784.591 kb on + strand, within ECD_02664at 2784.592 kb on - strand, within ECD_02664at 2784.592 kb on - strand, within ECD_02664at 2784.592 kb on - strand, within ECD_02664at 2784.592 kb on - strand, within ECD_02664at 2784.594 kb on + strand, within ECD_02664at 2784.595 kb on - strand, within ECD_02664at 2784.595 kb on - strand, within ECD_02664at 2784.595 kb on - strand, within ECD_02664at 2784.595 kb on - strand, within ECD_02664at 2784.606 kb on + strand, within ECD_02664at 2784.783 kb on + strand, within ECD_02664at 2784.783 kb on + strand, within ECD_02664at 2784.783 kb on + strand, within ECD_02664at 2784.784 kb on - strand, within ECD_02664at 2784.784 kb on - strand, within ECD_02664at 2784.784 kb on - strand, within ECD_02664at 2784.784 kb on - strand, within ECD_02664at 2784.784 kb on - strand, within ECD_02664at 2784.784 kb on - strand, within ECD_02664at 2784.784 kb on - strand, within ECD_02664at 2784.784 kb on - strand, within ECD_02664at 2784.784 kb on - strand, within ECD_02664at 2784.823 kb on - strand, within ECD_02664at 2784.823 kb on - strand, within ECD_02664at 2784.860 kb on + strand, within ECD_02664at 2784.860 kb on + strand, within ECD_02664at 2784.860 kb on + strand, within ECD_02664at 2784.860 kb on + strand, within ECD_02664at 2784.860 kb on + strand, within ECD_02664at 2784.860 kb on + strand, within ECD_02664at 2784.861 kb on - strand, within ECD_02664at 2784.861 kb on - strand, within ECD_02664at 2784.861 kb on - strand, within ECD_02664at 2784.925 kb on - strand, within ECD_02664at 2784.934 kb on - strand, within ECD_02664at 2784.964 kb on - strand, within ECD_02664at 2784.965 kb on + strand, within ECD_02664at 2784.966 kb on - strand, within ECD_02664at 2784.966 kb on - strand, within ECD_02664at 2784.969 kb on + strand, within ECD_02664at 2784.970 kb on - strand, within ECD_02664at 2785.032 kb on + strand, within ECD_02664at 2785.033 kb on - strand, within ECD_02664at 2785.038 kb on - strand, within ECD_02664at 2785.038 kb on - strand, within ECD_02664at 2785.041 kb on + strand, within ECD_02664at 2785.042 kb on - strand, within ECD_02664at 2785.042 kb on - strand, within ECD_02664at 2785.042 kb on - strand, within ECD_02664at 2785.042 kb on - strand, within ECD_02664at 2785.094 kb on + strand, within ECD_02664at 2785.094 kb on + strand, within ECD_02664at 2785.094 kb on + strand, within ECD_02664at 2785.095 kb on - strand, within ECD_02664at 2785.095 kb on - strand, within ECD_02664at 2785.095 kb on - strand, within ECD_02664at 2785.095 kb on - strand, within ECD_02664at 2785.105 kb on - strand, within ECD_02664at 2785.117 kb on - strand, within ECD_02664at 2785.121 kb on + strand, within ECD_02664at 2785.122 kb on - strand, within ECD_02664at 2785.122 kb on - strand, within ECD_02664at 2785.122 kb on - strand, within ECD_02664at 2785.171 kb on - strand, within ECD_02664at 2785.216 kb on - strand, within ECD_02664at 2785.216 kb on - strand, within ECD_02664at 2785.217 kb on + strand, within ECD_02664at 2785.217 kb on + strand, within ECD_02664at 2785.218 kb on - strand, within ECD_02664at 2785.218 kb on - strand, within ECD_02664at 2785.218 kb on - strand, within ECD_02664at 2785.218 kb on - strand, within ECD_02664at 2785.224 kb on + strand, within ECD_02664at 2785.224 kb on + strand, within ECD_02664at 2785.224 kb on + strand, within ECD_02664at 2785.258 kb on - strand, within ECD_02664at 2785.263 kb on + strand, within ECD_02664at 2785.264 kb on - strand, within ECD_02664at 2785.264 kb on - strand, within ECD_02664at 2785.270 kb on - strand, within ECD_02664at 2785.362 kb on + strandat 2785.362 kb on + strandat 2785.363 kb on - strandat 2785.364 kb on + strandat 2785.364 kb on + strandat 2785.365 kb on - strandat 2785.365 kb on - strandat 2785.428 kb on + strandat 2785.436 kb on + strandat 2785.436 kb on + strandat 2785.437 kb on - strandat 2785.437 kb on - strandat 2785.437 kb on - strandat 2785.437 kb on - strandat 2785.437 kb on - strandat 2785.437 kb on - strandat 2785.477 kb on - strandat 2785.499 kb on + strandat 2785.648 kb on + strandat 2785.648 kb on + strandat 2785.650 kb on + strandat 2785.761 kb on + strandat 2785.761 kb on + strandat 2785.761 kb on + strandat 2785.761 kb on + strandat 2785.761 kb on + strandat 2785.761 kb on + strandat 2785.761 kb on + strandat 2785.761 kb on + strandat 2785.761 kb on + strandat 2785.761 kb on + strandat 2785.769 kb on + strandat 2785.769 kb on + strandat 2785.769 kb on + strandat 2785.769 kb on + strandat 2785.769 kb on + strandat 2785.870 kb on + strandat 2785.870 kb on + strandat 2785.870 kb on + strandat 2785.966 kb on + strandat 2786.009 kb on + strandat 2786.010 kb on - strandat 2786.035 kb on + strandat 2786.035 kb on + strandat 2786.082 kb on - strandat 2786.082 kb on - strandat 2786.082 kb on - strandat 2786.139 kb on - strandat 2786.156 kb on + strandat 2786.193 kb on - strand, within ECD_02665at 2786.206 kb on - strand, within ECD_02665at 2786.268 kb on - strand, within ECD_02665at 2786.319 kb on + strand, within ECD_02665at 2786.320 kb on - strand, within ECD_02665at 2786.320 kb on - strand, within ECD_02665at 2786.411 kb on - strand, within ECD_02665at 2786.411 kb on - strand, within ECD_02665

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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2,783,489 - ECD_02663 0.21 -2.9
2,783,505 - ECD_02663 0.23 +3.2
2,783,505 - ECD_02663 0.23 -3.0
2,783,538 - ECD_02663 0.28 -0.6
2,783,687 + ECD_02663 0.46 -1.0
2,783,701 + ECD_02663 0.48 -2.0
2,783,702 - ECD_02663 0.48 -2.5
2,783,702 - ECD_02663 0.48 -1.0
2,783,727 + ECD_02663 0.51 -2.6
2,783,728 - ECD_02663 0.51 +3.7
2,783,752 + ECD_02663 0.54 -1.5
2,783,753 - ECD_02663 0.54 -0.5
2,783,759 - ECD_02663 0.55 -1.7
2,783,771 + ECD_02663 0.56 -0.7
2,783,771 + ECD_02663 0.56 +2.0
2,783,772 - ECD_02663 0.57 +3.2
2,783,772 - ECD_02663 0.57 -1.0
2,783,772 - ECD_02663 0.57 -1.9
2,783,772 - ECD_02663 0.57 -0.6
2,783,772 - ECD_02663 0.57 -1.4
2,783,772 - ECD_02663 0.57 +2.0
2,783,772 - ECD_02663 0.57 -3.4
2,783,772 - ECD_02663 0.57 -2.4
2,783,772 - ECD_02663 0.57 -1.7
2,783,772 - ECD_02663 0.57 -2.3
2,783,773 + ECD_02663 0.57 -0.9
2,783,773 + ECD_02663 0.57 -1.4
2,783,774 - ECD_02663 0.57 +3.2
2,783,774 - ECD_02663 0.57 -2.7
2,783,774 - ECD_02663 0.57 -2.6
2,783,774 - ECD_02663 0.57 -4.1
2,783,782 - ECD_02663 0.58 -2.0
2,783,818 - ECD_02663 0.62 -2.4
2,783,834 + ECD_02663 0.64 -1.5
2,783,847 - ECD_02663 0.66 -1.6
2,783,859 - ECD_02663 0.67 -3.0
2,783,916 - ECD_02663 0.74 -1.9
2,783,916 - ECD_02663 0.74 -2.0
2,784,026 + ECD_02663 0.88 -0.6
2,784,026 + ECD_02663 0.88 +3.4
2,784,027 - ECD_02663 0.88 -2.9
2,784,027 - ECD_02663 0.88 -3.0
2,784,027 - ECD_02663 0.88 -2.0
2,784,027 - ECD_02663 0.88 -1.4
2,784,064 + -0.6
2,784,065 - -2.9
2,784,107 + -1.0
2,784,108 - +4.0
2,784,108 - -0.7
2,784,108 - -1.7
2,784,108 - +2.8
2,784,108 - -4.1
2,784,112 - +3.4
2,784,112 - -1.9
2,784,112 - -2.9
2,784,122 + -1.9
2,784,122 + -2.4
2,784,122 + -3.9
2,784,122 + -3.0
2,784,123 - -1.6
2,784,123 - -1.5
2,784,123 - -1.9
2,784,123 - -1.3
2,784,123 - -2.4
2,784,123 - +1.3
2,784,123 - -1.7
2,784,123 - +0.5
2,784,123 - -0.8
2,784,123 - -0.0
2,784,123 - +3.4
2,784,123 - -0.9
2,784,123 - +2.9
2,784,123 - +2.1
2,784,123 - -0.4
2,784,123 - -0.5
2,784,123 - -3.2
2,784,136 + +3.0
2,784,171 + -1.3
2,784,194 - +2.6
2,784,202 + -0.9
2,784,203 - -0.7
2,784,203 - -0.6
2,784,203 - -1.4
2,784,203 - -0.0
2,784,206 + -1.0
2,784,206 + -1.7
2,784,207 - +4.0
2,784,219 - -1.9
2,784,289 + -2.0
2,784,296 + -1.0
2,784,330 + -1.5
2,784,331 - -1.3
2,784,331 - -1.9
2,784,336 + +2.6
2,784,354 + -2.7
2,784,355 - -0.6
2,784,355 - +0.0
2,784,355 - -0.7
2,784,355 - -1.9
2,784,428 + -1.5
2,784,429 - -0.9
2,784,429 - +0.5
2,784,429 - -1.1
2,784,470 + -1.7
2,784,470 + +2.9
2,784,470 + +1.5
2,784,470 + -2.0
2,784,471 - ECD_02664 0.10 -1.2
2,784,471 - ECD_02664 0.10 -3.0
2,784,471 - ECD_02664 0.10 -0.9
2,784,471 - ECD_02664 0.10 -1.4
2,784,471 - ECD_02664 0.10 -0.9
2,784,471 - ECD_02664 0.10 -0.7
2,784,471 - ECD_02664 0.10 -0.8
2,784,471 - ECD_02664 0.10 -2.6
2,784,471 - ECD_02664 0.10 -0.2
2,784,471 - ECD_02664 0.10 -1.5
2,784,471 - ECD_02664 0.10 -0.6
2,784,471 - ECD_02664 0.10 -0.3
2,784,471 - ECD_02664 0.10 -2.0
2,784,536 + ECD_02664 0.16 -1.2
2,784,546 + ECD_02664 0.17 +3.1
2,784,559 - ECD_02664 0.18 +2.8
2,784,562 - ECD_02664 0.18 -0.9
2,784,591 + ECD_02664 0.21 +2.8
2,784,592 - ECD_02664 0.21 +3.8
2,784,592 - ECD_02664 0.21 -0.3
2,784,592 - ECD_02664 0.21 -0.3
2,784,592 - ECD_02664 0.21 -2.2
2,784,594 + ECD_02664 0.21 -0.7
2,784,595 - ECD_02664 0.21 -1.3
2,784,595 - ECD_02664 0.21 +4.1
2,784,595 - ECD_02664 0.21 -0.0
2,784,595 - ECD_02664 0.21 -0.6
2,784,606 + ECD_02664 0.22 +0.5
2,784,783 + ECD_02664 0.38 -0.9
2,784,783 + ECD_02664 0.38 -0.7
2,784,783 + ECD_02664 0.38 -0.5
2,784,784 - ECD_02664 0.39 -0.6
2,784,784 - ECD_02664 0.39 -1.6
2,784,784 - ECD_02664 0.39 -3.4
2,784,784 - ECD_02664 0.39 +2.7
2,784,784 - ECD_02664 0.39 +0.3
2,784,784 - ECD_02664 0.39 +0.1
2,784,784 - ECD_02664 0.39 -1.6
2,784,784 - ECD_02664 0.39 -2.2
2,784,784 - ECD_02664 0.39 -0.0
2,784,823 - ECD_02664 0.42 -0.4
2,784,823 - ECD_02664 0.42 +2.6
2,784,860 + ECD_02664 0.45 +3.5
2,784,860 + ECD_02664 0.45 +3.0
2,784,860 + ECD_02664 0.45 +4.0
2,784,860 + ECD_02664 0.45 -2.4
2,784,860 + ECD_02664 0.45 -2.4
2,784,860 + ECD_02664 0.45 -2.0
2,784,861 - ECD_02664 0.46 +3.7
2,784,861 - ECD_02664 0.46 -1.9
2,784,861 - ECD_02664 0.46 +2.3
2,784,925 - ECD_02664 0.51 -0.0
2,784,934 - ECD_02664 0.52 -4.0
2,784,964 - ECD_02664 0.55 -0.9
2,784,965 + ECD_02664 0.55 +3.1
2,784,966 - ECD_02664 0.55 +3.1
2,784,966 - ECD_02664 0.55 +0.3
2,784,969 + ECD_02664 0.55 -0.6
2,784,970 - ECD_02664 0.55 -1.4
2,785,032 + ECD_02664 0.61 -0.0
2,785,033 - ECD_02664 0.61 -2.0
2,785,038 - ECD_02664 0.62 +4.1
2,785,038 - ECD_02664 0.62 +1.5
2,785,041 + ECD_02664 0.62 -0.3
2,785,042 - ECD_02664 0.62 -0.2
2,785,042 - ECD_02664 0.62 -2.6
2,785,042 - ECD_02664 0.62 -1.0
2,785,042 - ECD_02664 0.62 +3.2
2,785,094 + ECD_02664 0.67 -0.7
2,785,094 + ECD_02664 0.67 -2.7
2,785,094 + ECD_02664 0.67 -1.0
2,785,095 - ECD_02664 0.67 -0.5
2,785,095 - ECD_02664 0.67 -2.6
2,785,095 - ECD_02664 0.67 -1.4
2,785,095 - ECD_02664 0.67 -2.2
2,785,105 - ECD_02664 0.68 -0.9
2,785,117 - ECD_02664 0.69 +3.3
2,785,121 + ECD_02664 0.69 -0.8
2,785,122 - ECD_02664 0.69 -1.0
2,785,122 - ECD_02664 0.69 -0.7
2,785,122 - ECD_02664 0.69 -1.9
2,785,171 - ECD_02664 0.74 -0.6
2,785,216 - ECD_02664 0.78 -0.4
2,785,216 - ECD_02664 0.78 +3.3
2,785,217 + ECD_02664 0.78 -0.7
2,785,217 + ECD_02664 0.78 +0.7
2,785,218 - ECD_02664 0.78 +0.8
2,785,218 - ECD_02664 0.78 -2.6
2,785,218 - ECD_02664 0.78 +0.1
2,785,218 - ECD_02664 0.78 -2.4
2,785,224 + ECD_02664 0.79 -0.2
2,785,224 + ECD_02664 0.79 -1.5
2,785,224 + ECD_02664 0.79 -0.8
2,785,258 - ECD_02664 0.82 -1.0
2,785,263 + ECD_02664 0.82 -0.9
2,785,264 - ECD_02664 0.82 -1.2
2,785,264 - ECD_02664 0.82 -0.4
2,785,270 - ECD_02664 0.83 -1.0
2,785,362 + -1.0
2,785,362 + +2.7
2,785,363 - -1.2
2,785,364 + -0.3
2,785,364 + -0.6
2,785,365 - -0.6
2,785,365 - -1.9
2,785,428 + -0.6
2,785,436 + -0.0
2,785,436 + -0.2
2,785,437 - -0.0
2,785,437 - -1.4
2,785,437 - -1.5
2,785,437 - +1.4
2,785,437 - -0.8
2,785,437 - -2.0
2,785,477 - +0.2
2,785,499 + +0.7
2,785,648 + +2.9
2,785,648 + +2.4
2,785,650 + +2.2
2,785,761 + -1.0
2,785,761 + +1.8
2,785,761 + -0.2
2,785,761 + -1.3
2,785,761 + +0.2
2,785,761 + +1.0
2,785,761 + +3.1
2,785,761 + -1.0
2,785,761 + -0.7
2,785,761 + +2.6
2,785,769 + -0.4
2,785,769 + -0.2
2,785,769 + -0.4
2,785,769 + +4.2
2,785,769 + -0.8
2,785,870 + -1.6
2,785,870 + -1.1
2,785,870 + -1.4
2,785,966 + -2.2
2,786,009 + -1.0
2,786,010 - -0.9
2,786,035 + -3.2
2,786,035 + -1.0
2,786,082 - -1.2
2,786,082 - -0.4
2,786,082 - +0.4
2,786,139 - +0.4
2,786,156 + -0.5
2,786,193 - ECD_02665 0.12 -0.3
2,786,206 - ECD_02665 0.13 -1.6
2,786,268 - ECD_02665 0.18 +0.5
2,786,319 + ECD_02665 0.22 -1.3
2,786,320 - ECD_02665 0.23 +3.2
2,786,320 - ECD_02665 0.23 +4.2
2,786,411 - ECD_02665 0.30 -0.6
2,786,411 - ECD_02665 0.30 -1.2

Or see this region's nucleotide sequence