Strain Fitness in Escherichia coli BL21 around ECD_02654

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02653 and ECD_02654 are separated by 108 nucleotidesECD_02654 and ECD_02655 are separated by 1 nucleotidesECD_02655 and ECD_02656 are separated by 57 nucleotides ECD_02653: ECD_02653 - L-fucose isomerase, at 2,773,864 to 2,775,639 _02653 ECD_02654: ECD_02654 - L-fuculokinase, at 2,775,748 to 2,777,166 _02654 ECD_02655: ECD_02655 - L-fucose mutarotase, at 2,777,168 to 2,777,590 _02655 ECD_02656: ECD_02656 - l-fucose operon activator, at 2,777,648 to 2,778,379 _02656 Position (kb) 2775 2776 2777 2778Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2774.952 kb on + strand, within ECD_02653at 2774.952 kb on + strand, within ECD_02653at 2774.952 kb on + strand, within ECD_02653at 2774.952 kb on + strand, within ECD_02653at 2774.952 kb on + strand, within ECD_02653at 2774.953 kb on - strand, within ECD_02653at 2774.956 kb on + strand, within ECD_02653at 2774.956 kb on + strand, within ECD_02653at 2774.956 kb on + strand, within ECD_02653at 2774.956 kb on + strand, within ECD_02653at 2774.984 kb on + strand, within ECD_02653at 2774.985 kb on - strand, within ECD_02653at 2774.994 kb on + strand, within ECD_02653at 2774.994 kb on + strand, within ECD_02653at 2775.069 kb on + strand, within ECD_02653at 2775.091 kb on - strand, within ECD_02653at 2775.181 kb on + strand, within ECD_02653at 2775.181 kb on + strand, within ECD_02653at 2775.181 kb on + strand, within ECD_02653at 2775.181 kb on + strand, within ECD_02653at 2775.181 kb on + strand, within ECD_02653at 2775.182 kb on - strand, within ECD_02653at 2775.415 kb on + strand, within ECD_02653at 2775.415 kb on + strand, within ECD_02653at 2775.415 kb on + strand, within ECD_02653at 2775.415 kb on + strand, within ECD_02653at 2775.415 kb on + strand, within ECD_02653at 2775.416 kb on - strand, within ECD_02653at 2775.416 kb on - strand, within ECD_02653at 2775.483 kb on + strandat 2775.516 kb on - strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.519 kb on + strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.520 kb on - strandat 2775.547 kb on + strandat 2775.547 kb on + strandat 2775.547 kb on + strandat 2775.548 kb on - strandat 2775.599 kb on - strandat 2775.616 kb on + strandat 2775.616 kb on + strandat 2775.616 kb on + strandat 2775.617 kb on - strandat 2775.617 kb on - strandat 2775.628 kb on + strandat 2775.629 kb on - strandat 2775.629 kb on - strandat 2775.629 kb on - strandat 2775.638 kb on - strandat 2775.640 kb on + strandat 2775.640 kb on + strandat 2775.640 kb on + strandat 2775.640 kb on + strandat 2775.640 kb on + strandat 2775.640 kb on + strandat 2775.640 kb on + strandat 2775.640 kb on + strandat 2775.640 kb on + strandat 2775.641 kb on - strandat 2775.641 kb on - strandat 2775.641 kb on - strandat 2775.645 kb on + strandat 2775.645 kb on + strandat 2775.730 kb on + strandat 2775.731 kb on - strandat 2775.732 kb on + strandat 2775.732 kb on + strandat 2775.733 kb on - strandat 2775.733 kb on - strandat 2775.748 kb on - strandat 2775.770 kb on + strandat 2775.945 kb on + strand, within ECD_02654at 2775.945 kb on + strand, within ECD_02654at 2775.946 kb on - strand, within ECD_02654at 2776.013 kb on + strand, within ECD_02654at 2776.013 kb on + strand, within ECD_02654at 2776.014 kb on - strand, within ECD_02654at 2776.017 kb on + strand, within ECD_02654at 2776.017 kb on + strand, within ECD_02654at 2776.018 kb on - strand, within ECD_02654at 2776.018 kb on - strand, within ECD_02654at 2776.048 kb on - strand, within ECD_02654at 2776.225 kb on - strand, within ECD_02654at 2776.225 kb on - strand, within ECD_02654at 2776.266 kb on + strand, within ECD_02654at 2776.266 kb on + strand, within ECD_02654at 2776.401 kb on + strand, within ECD_02654at 2776.401 kb on + strand, within ECD_02654at 2776.402 kb on - strand, within ECD_02654at 2776.449 kb on - strand, within ECD_02654at 2776.533 kb on + strand, within ECD_02654at 2776.534 kb on - strand, within ECD_02654at 2776.572 kb on + strand, within ECD_02654at 2776.573 kb on - strand, within ECD_02654at 2776.583 kb on + strand, within ECD_02654at 2776.583 kb on + strand, within ECD_02654at 2776.633 kb on + strand, within ECD_02654at 2776.633 kb on + strand, within ECD_02654at 2776.633 kb on + strand, within ECD_02654at 2776.633 kb on + strand, within ECD_02654at 2776.633 kb on + strand, within ECD_02654at 2776.633 kb on + strand, within ECD_02654at 2776.633 kb on + strand, within ECD_02654at 2776.633 kb on + strand, within ECD_02654at 2776.634 kb on - strand, within ECD_02654at 2776.634 kb on - strand, within ECD_02654at 2776.634 kb on - strand, within ECD_02654at 2776.634 kb on - strand, within ECD_02654at 2776.634 kb on - strand, within ECD_02654at 2776.634 kb on - strand, within ECD_02654at 2776.634 kb on - strand, within ECD_02654at 2776.644 kb on + strand, within ECD_02654at 2776.644 kb on + strand, within ECD_02654at 2776.645 kb on - strand, within ECD_02654at 2776.645 kb on - strand, within ECD_02654at 2776.781 kb on + strand, within ECD_02654at 2776.781 kb on + strand, within ECD_02654at 2776.782 kb on - strand, within ECD_02654at 2776.822 kb on - strand, within ECD_02654at 2776.824 kb on + strand, within ECD_02654at 2776.827 kb on + strand, within ECD_02654at 2776.866 kb on - strand, within ECD_02654at 2776.878 kb on - strand, within ECD_02654at 2776.889 kb on + strand, within ECD_02654at 2776.931 kb on + strand, within ECD_02654at 2776.986 kb on + strand, within ECD_02654at 2776.986 kb on + strand, within ECD_02654at 2777.076 kb on + strandat 2777.122 kb on + strandat 2777.128 kb on + strandat 2777.151 kb on + strandat 2777.154 kb on - strandat 2777.190 kb on + strandat 2777.363 kb on + strand, within ECD_02655at 2777.363 kb on + strand, within ECD_02655at 2777.395 kb on - strand, within ECD_02655at 2777.421 kb on + strand, within ECD_02655at 2777.421 kb on + strand, within ECD_02655at 2777.438 kb on - strand, within ECD_02655at 2777.452 kb on - strand, within ECD_02655at 2777.498 kb on + strand, within ECD_02655at 2777.499 kb on - strand, within ECD_02655at 2777.560 kb on + strandat 2777.588 kb on + strandat 2777.596 kb on + strandat 2777.596 kb on + strandat 2777.647 kb on + strandat 2777.673 kb on + strandat 2777.695 kb on + strandat 2777.695 kb on + strandat 2777.695 kb on + strandat 2777.741 kb on - strand, within ECD_02656at 2777.812 kb on + strand, within ECD_02656at 2777.816 kb on + strand, within ECD_02656at 2777.816 kb on + strand, within ECD_02656at 2777.816 kb on + strand, within ECD_02656at 2777.816 kb on + strand, within ECD_02656at 2777.817 kb on - strand, within ECD_02656at 2777.817 kb on - strand, within ECD_02656at 2777.817 kb on - strand, within ECD_02656at 2777.818 kb on + strand, within ECD_02656at 2777.818 kb on + strand, within ECD_02656at 2777.819 kb on - strand, within ECD_02656at 2777.876 kb on + strand, within ECD_02656at 2777.943 kb on + strand, within ECD_02656at 2777.943 kb on + strand, within ECD_02656at 2777.966 kb on + strand, within ECD_02656at 2778.014 kb on - strand, within ECD_02656at 2778.092 kb on + strand, within ECD_02656at 2778.092 kb on + strand, within ECD_02656at 2778.093 kb on - strand, within ECD_02656at 2778.093 kb on - strand, within ECD_02656at 2778.101 kb on + strand, within ECD_02656at 2778.102 kb on - strand, within ECD_02656at 2778.102 kb on - strand, within ECD_02656at 2778.102 kb on - strand, within ECD_02656at 2778.102 kb on - strand, within ECD_02656at 2778.130 kb on + strand, within ECD_02656at 2778.131 kb on - strand, within ECD_02656

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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2,774,952 + ECD_02653 0.61 -1.1
2,774,952 + ECD_02653 0.61 -0.1
2,774,952 + ECD_02653 0.61 +2.8
2,774,952 + ECD_02653 0.61 +1.9
2,774,952 + ECD_02653 0.61 -1.1
2,774,953 - ECD_02653 0.61 -0.8
2,774,956 + ECD_02653 0.61 +3.5
2,774,956 + ECD_02653 0.61 +0.3
2,774,956 + ECD_02653 0.61 +0.4
2,774,956 + ECD_02653 0.61 +0.7
2,774,984 + ECD_02653 0.63 -1.1
2,774,985 - ECD_02653 0.63 +1.9
2,774,994 + ECD_02653 0.64 -2.2
2,774,994 + ECD_02653 0.64 -0.5
2,775,069 + ECD_02653 0.68 -0.1
2,775,091 - ECD_02653 0.69 -2.9
2,775,181 + ECD_02653 0.74 -0.3
2,775,181 + ECD_02653 0.74 -0.1
2,775,181 + ECD_02653 0.74 -0.5
2,775,181 + ECD_02653 0.74 -2.9
2,775,181 + ECD_02653 0.74 -1.6
2,775,182 - ECD_02653 0.74 -0.5
2,775,415 + ECD_02653 0.87 -0.2
2,775,415 + ECD_02653 0.87 -2.1
2,775,415 + ECD_02653 0.87 -1.5
2,775,415 + ECD_02653 0.87 -1.1
2,775,415 + ECD_02653 0.87 -0.7
2,775,416 - ECD_02653 0.87 -0.8
2,775,416 - ECD_02653 0.87 +0.8
2,775,483 + -0.5
2,775,516 - +3.1
2,775,519 + +3.9
2,775,519 + +0.3
2,775,519 + -0.1
2,775,519 + -0.3
2,775,519 + -0.2
2,775,519 + -0.3
2,775,519 + +2.7
2,775,519 + +2.6
2,775,519 + -1.8
2,775,519 + -0.1
2,775,519 + -0.9
2,775,519 + +0.5
2,775,519 + +3.9
2,775,519 + +0.3
2,775,519 + +2.4
2,775,519 + -0.3
2,775,519 + -1.1
2,775,519 + -0.5
2,775,519 + -1.5
2,775,519 + -1.6
2,775,519 + -0.1
2,775,519 + -0.1
2,775,519 + +3.6
2,775,519 + +0.2
2,775,519 + +2.9
2,775,519 + -0.6
2,775,520 - -0.4
2,775,520 - -1.4
2,775,520 - +0.3
2,775,520 - -2.2
2,775,520 - +2.7
2,775,520 - -1.4
2,775,520 - -1.8
2,775,520 - -1.6
2,775,520 - -1.9
2,775,520 - -1.0
2,775,520 - -0.2
2,775,520 - -1.4
2,775,520 - -0.9
2,775,520 - -0.1
2,775,520 - -0.8
2,775,520 - -0.2
2,775,520 - -1.6
2,775,520 - -1.2
2,775,520 - -1.1
2,775,520 - +3.5
2,775,520 - -2.4
2,775,520 - -1.9
2,775,520 - -0.4
2,775,547 + +0.9
2,775,547 + +2.8
2,775,547 + -0.1
2,775,548 - -0.5
2,775,599 - +0.4
2,775,616 + -1.4
2,775,616 + -0.1
2,775,616 + -0.3
2,775,617 - +1.5
2,775,617 - -0.2
2,775,628 + -0.2
2,775,629 - +0.5
2,775,629 - +0.6
2,775,629 - +0.3
2,775,638 - -4.4
2,775,640 + -1.1
2,775,640 + +0.0
2,775,640 + -1.5
2,775,640 + +0.7
2,775,640 + -0.5
2,775,640 + +2.2
2,775,640 + -0.5
2,775,640 + -0.6
2,775,640 + -0.6
2,775,641 - -0.6
2,775,641 - -0.9
2,775,641 - -0.8
2,775,645 + +2.4
2,775,645 + -1.5
2,775,730 + -0.4
2,775,731 - -0.6
2,775,732 + -0.5
2,775,732 + -0.4
2,775,733 - -0.2
2,775,733 - -0.1
2,775,748 - -1.5
2,775,770 + -2.2
2,775,945 + ECD_02654 0.14 +0.1
2,775,945 + ECD_02654 0.14 -0.9
2,775,946 - ECD_02654 0.14 +2.4
2,776,013 + ECD_02654 0.19 -1.9
2,776,013 + ECD_02654 0.19 +3.0
2,776,014 - ECD_02654 0.19 +2.1
2,776,017 + ECD_02654 0.19 -1.3
2,776,017 + ECD_02654 0.19 +3.4
2,776,018 - ECD_02654 0.19 -0.5
2,776,018 - ECD_02654 0.19 +4.4
2,776,048 - ECD_02654 0.21 -2.1
2,776,225 - ECD_02654 0.34 -0.5
2,776,225 - ECD_02654 0.34 -0.9
2,776,266 + ECD_02654 0.37 -0.4
2,776,266 + ECD_02654 0.37 +0.6
2,776,401 + ECD_02654 0.46 -1.5
2,776,401 + ECD_02654 0.46 -0.1
2,776,402 - ECD_02654 0.46 -0.7
2,776,449 - ECD_02654 0.49 +3.4
2,776,533 + ECD_02654 0.55 -0.4
2,776,534 - ECD_02654 0.55 -0.0
2,776,572 + ECD_02654 0.58 -1.1
2,776,573 - ECD_02654 0.58 -0.6
2,776,583 + ECD_02654 0.59 -0.1
2,776,583 + ECD_02654 0.59 -0.5
2,776,633 + ECD_02654 0.62 -0.0
2,776,633 + ECD_02654 0.62 -0.6
2,776,633 + ECD_02654 0.62 -2.1
2,776,633 + ECD_02654 0.62 +0.9
2,776,633 + ECD_02654 0.62 -0.9
2,776,633 + ECD_02654 0.62 +2.5
2,776,633 + ECD_02654 0.62 -0.6
2,776,633 + ECD_02654 0.62 -0.6
2,776,634 - ECD_02654 0.62 +0.4
2,776,634 - ECD_02654 0.62 +2.3
2,776,634 - ECD_02654 0.62 -0.2
2,776,634 - ECD_02654 0.62 +4.4
2,776,634 - ECD_02654 0.62 +1.3
2,776,634 - ECD_02654 0.62 -1.1
2,776,634 - ECD_02654 0.62 -0.9
2,776,644 + ECD_02654 0.63 -0.5
2,776,644 + ECD_02654 0.63 -1.1
2,776,645 - ECD_02654 0.63 -1.4
2,776,645 - ECD_02654 0.63 -0.9
2,776,781 + ECD_02654 0.73 -0.8
2,776,781 + ECD_02654 0.73 +0.2
2,776,782 - ECD_02654 0.73 -0.1
2,776,822 - ECD_02654 0.76 -0.7
2,776,824 + ECD_02654 0.76 +3.6
2,776,827 + ECD_02654 0.76 -1.3
2,776,866 - ECD_02654 0.79 -2.6
2,776,878 - ECD_02654 0.80 -0.1
2,776,889 + ECD_02654 0.80 -0.4
2,776,931 + ECD_02654 0.83 +0.0
2,776,986 + ECD_02654 0.87 -1.1
2,776,986 + ECD_02654 0.87 +0.0
2,777,076 + -0.5
2,777,122 + +0.4
2,777,128 + -0.6
2,777,151 + +1.8
2,777,154 - -1.1
2,777,190 + -1.3
2,777,363 + ECD_02655 0.46 -0.8
2,777,363 + ECD_02655 0.46 -2.2
2,777,395 - ECD_02655 0.54 -2.1
2,777,421 + ECD_02655 0.60 +0.2
2,777,421 + ECD_02655 0.60 -2.2
2,777,438 - ECD_02655 0.64 -1.8
2,777,452 - ECD_02655 0.67 -2.1
2,777,498 + ECD_02655 0.78 -0.6
2,777,499 - ECD_02655 0.78 -0.4
2,777,560 + +2.7
2,777,588 + -1.2
2,777,596 + -0.7
2,777,596 + -1.7
2,777,647 + -2.3
2,777,673 + -1.3
2,777,695 + +0.3
2,777,695 + -0.2
2,777,695 + -1.1
2,777,741 - ECD_02656 0.13 -0.5
2,777,812 + ECD_02656 0.22 -1.2
2,777,816 + ECD_02656 0.23 -0.7
2,777,816 + ECD_02656 0.23 +0.4
2,777,816 + ECD_02656 0.23 +3.0
2,777,816 + ECD_02656 0.23 -0.6
2,777,817 - ECD_02656 0.23 +2.4
2,777,817 - ECD_02656 0.23 -0.4
2,777,817 - ECD_02656 0.23 -1.7
2,777,818 + ECD_02656 0.23 +0.4
2,777,818 + ECD_02656 0.23 -0.9
2,777,819 - ECD_02656 0.23 +0.1
2,777,876 + ECD_02656 0.31 -1.1
2,777,943 + ECD_02656 0.40 +3.9
2,777,943 + ECD_02656 0.40 +3.3
2,777,966 + ECD_02656 0.43 -0.2
2,778,014 - ECD_02656 0.50 +1.0
2,778,092 + ECD_02656 0.61 -2.6
2,778,092 + ECD_02656 0.61 -1.6
2,778,093 - ECD_02656 0.61 -2.3
2,778,093 - ECD_02656 0.61 -0.6
2,778,101 + ECD_02656 0.62 +0.5
2,778,102 - ECD_02656 0.62 -0.8
2,778,102 - ECD_02656 0.62 -1.3
2,778,102 - ECD_02656 0.62 +0.7
2,778,102 - ECD_02656 0.62 -0.3
2,778,130 + ECD_02656 0.66 +0.2
2,778,131 - ECD_02656 0.66 -0.8

Or see this region's nucleotide sequence