Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02653 and ECD_02654 are separated by 108 nucleotides ECD_02654 and ECD_02655 are separated by 1 nucleotides ECD_02655 and ECD_02656 are separated by 57 nucleotides
ECD_02653: ECD_02653 - L-fucose isomerase, at 2,773,864 to 2,775,639
_02653
ECD_02654: ECD_02654 - L-fuculokinase, at 2,775,748 to 2,777,166
_02654
ECD_02655: ECD_02655 - L-fucose mutarotase, at 2,777,168 to 2,777,590
_02655
ECD_02656: ECD_02656 - l-fucose operon activator, at 2,777,648 to 2,778,379
_02656
Position (kb)
2775
2776
2777
2778 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2774.952 kb on + strand, within ECD_02653 at 2774.952 kb on + strand, within ECD_02653 at 2774.952 kb on + strand, within ECD_02653 at 2774.952 kb on + strand, within ECD_02653 at 2774.952 kb on + strand, within ECD_02653 at 2774.953 kb on - strand, within ECD_02653 at 2774.956 kb on + strand, within ECD_02653 at 2774.956 kb on + strand, within ECD_02653 at 2774.956 kb on + strand, within ECD_02653 at 2774.956 kb on + strand, within ECD_02653 at 2774.984 kb on + strand, within ECD_02653 at 2774.985 kb on - strand, within ECD_02653 at 2774.994 kb on + strand, within ECD_02653 at 2774.994 kb on + strand, within ECD_02653 at 2775.069 kb on + strand, within ECD_02653 at 2775.091 kb on - strand, within ECD_02653 at 2775.181 kb on + strand, within ECD_02653 at 2775.181 kb on + strand, within ECD_02653 at 2775.181 kb on + strand, within ECD_02653 at 2775.181 kb on + strand, within ECD_02653 at 2775.181 kb on + strand, within ECD_02653 at 2775.182 kb on - strand, within ECD_02653 at 2775.415 kb on + strand, within ECD_02653 at 2775.415 kb on + strand, within ECD_02653 at 2775.415 kb on + strand, within ECD_02653 at 2775.415 kb on + strand, within ECD_02653 at 2775.415 kb on + strand, within ECD_02653 at 2775.416 kb on - strand, within ECD_02653 at 2775.416 kb on - strand, within ECD_02653 at 2775.483 kb on + strand at 2775.516 kb on - strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.519 kb on + strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.520 kb on - strand at 2775.547 kb on + strand at 2775.547 kb on + strand at 2775.547 kb on + strand at 2775.548 kb on - strand at 2775.599 kb on - strand at 2775.616 kb on + strand at 2775.616 kb on + strand at 2775.616 kb on + strand at 2775.617 kb on - strand at 2775.617 kb on - strand at 2775.628 kb on + strand at 2775.629 kb on - strand at 2775.629 kb on - strand at 2775.629 kb on - strand at 2775.638 kb on - strand at 2775.640 kb on + strand at 2775.640 kb on + strand at 2775.640 kb on + strand at 2775.640 kb on + strand at 2775.640 kb on + strand at 2775.640 kb on + strand at 2775.640 kb on + strand at 2775.640 kb on + strand at 2775.640 kb on + strand at 2775.641 kb on - strand at 2775.641 kb on - strand at 2775.641 kb on - strand at 2775.645 kb on + strand at 2775.645 kb on + strand at 2775.730 kb on + strand at 2775.731 kb on - strand at 2775.732 kb on + strand at 2775.732 kb on + strand at 2775.733 kb on - strand at 2775.733 kb on - strand at 2775.748 kb on - strand at 2775.770 kb on + strand at 2775.945 kb on + strand, within ECD_02654 at 2775.945 kb on + strand, within ECD_02654 at 2775.946 kb on - strand, within ECD_02654 at 2776.013 kb on + strand, within ECD_02654 at 2776.013 kb on + strand, within ECD_02654 at 2776.014 kb on - strand, within ECD_02654 at 2776.017 kb on + strand, within ECD_02654 at 2776.017 kb on + strand, within ECD_02654 at 2776.018 kb on - strand, within ECD_02654 at 2776.018 kb on - strand, within ECD_02654 at 2776.048 kb on - strand, within ECD_02654 at 2776.225 kb on - strand, within ECD_02654 at 2776.225 kb on - strand, within ECD_02654 at 2776.266 kb on + strand, within ECD_02654 at 2776.266 kb on + strand, within ECD_02654 at 2776.401 kb on + strand, within ECD_02654 at 2776.401 kb on + strand, within ECD_02654 at 2776.402 kb on - strand, within ECD_02654 at 2776.449 kb on - strand, within ECD_02654 at 2776.533 kb on + strand, within ECD_02654 at 2776.534 kb on - strand, within ECD_02654 at 2776.572 kb on + strand, within ECD_02654 at 2776.573 kb on - strand, within ECD_02654 at 2776.583 kb on + strand, within ECD_02654 at 2776.583 kb on + strand, within ECD_02654 at 2776.633 kb on + strand, within ECD_02654 at 2776.633 kb on + strand, within ECD_02654 at 2776.633 kb on + strand, within ECD_02654 at 2776.633 kb on + strand, within ECD_02654 at 2776.633 kb on + strand, within ECD_02654 at 2776.633 kb on + strand, within ECD_02654 at 2776.633 kb on + strand, within ECD_02654 at 2776.633 kb on + strand, within ECD_02654 at 2776.634 kb on - strand, within ECD_02654 at 2776.634 kb on - strand, within ECD_02654 at 2776.634 kb on - strand, within ECD_02654 at 2776.634 kb on - strand, within ECD_02654 at 2776.634 kb on - strand, within ECD_02654 at 2776.634 kb on - strand, within ECD_02654 at 2776.634 kb on - strand, within ECD_02654 at 2776.644 kb on + strand, within ECD_02654 at 2776.644 kb on + strand, within ECD_02654 at 2776.645 kb on - strand, within ECD_02654 at 2776.645 kb on - strand, within ECD_02654 at 2776.781 kb on + strand, within ECD_02654 at 2776.781 kb on + strand, within ECD_02654 at 2776.782 kb on - strand, within ECD_02654 at 2776.822 kb on - strand, within ECD_02654 at 2776.824 kb on + strand, within ECD_02654 at 2776.827 kb on + strand, within ECD_02654 at 2776.866 kb on - strand, within ECD_02654 at 2776.878 kb on - strand, within ECD_02654 at 2776.889 kb on + strand, within ECD_02654 at 2776.931 kb on + strand, within ECD_02654 at 2776.986 kb on + strand, within ECD_02654 at 2776.986 kb on + strand, within ECD_02654 at 2777.076 kb on + strand at 2777.122 kb on + strand at 2777.128 kb on + strand at 2777.151 kb on + strand at 2777.154 kb on - strand at 2777.190 kb on + strand at 2777.363 kb on + strand, within ECD_02655 at 2777.363 kb on + strand, within ECD_02655 at 2777.395 kb on - strand, within ECD_02655 at 2777.421 kb on + strand, within ECD_02655 at 2777.421 kb on + strand, within ECD_02655 at 2777.438 kb on - strand, within ECD_02655 at 2777.452 kb on - strand, within ECD_02655 at 2777.498 kb on + strand, within ECD_02655 at 2777.499 kb on - strand, within ECD_02655 at 2777.560 kb on + strand at 2777.588 kb on + strand at 2777.596 kb on + strand at 2777.596 kb on + strand at 2777.647 kb on + strand at 2777.673 kb on + strand at 2777.695 kb on + strand at 2777.695 kb on + strand at 2777.695 kb on + strand at 2777.741 kb on - strand, within ECD_02656 at 2777.812 kb on + strand, within ECD_02656 at 2777.816 kb on + strand, within ECD_02656 at 2777.816 kb on + strand, within ECD_02656 at 2777.816 kb on + strand, within ECD_02656 at 2777.816 kb on + strand, within ECD_02656 at 2777.817 kb on - strand, within ECD_02656 at 2777.817 kb on - strand, within ECD_02656 at 2777.817 kb on - strand, within ECD_02656 at 2777.818 kb on + strand, within ECD_02656 at 2777.818 kb on + strand, within ECD_02656 at 2777.819 kb on - strand, within ECD_02656 at 2777.876 kb on + strand, within ECD_02656 at 2777.943 kb on + strand, within ECD_02656 at 2777.943 kb on + strand, within ECD_02656 at 2777.966 kb on + strand, within ECD_02656 at 2778.014 kb on - strand, within ECD_02656 at 2778.092 kb on + strand, within ECD_02656 at 2778.092 kb on + strand, within ECD_02656 at 2778.093 kb on - strand, within ECD_02656 at 2778.093 kb on - strand, within ECD_02656 at 2778.101 kb on + strand, within ECD_02656 at 2778.102 kb on - strand, within ECD_02656 at 2778.102 kb on - strand, within ECD_02656 at 2778.102 kb on - strand, within ECD_02656 at 2778.102 kb on - strand, within ECD_02656 at 2778.130 kb on + strand, within ECD_02656 at 2778.131 kb on - strand, within ECD_02656
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 2,774,952 + ECD_02653 0.61 -1.1 2,774,952 + ECD_02653 0.61 -0.1 2,774,952 + ECD_02653 0.61 +2.8 2,774,952 + ECD_02653 0.61 +1.9 2,774,952 + ECD_02653 0.61 -1.1 2,774,953 - ECD_02653 0.61 -0.8 2,774,956 + ECD_02653 0.61 +3.5 2,774,956 + ECD_02653 0.61 +0.3 2,774,956 + ECD_02653 0.61 +0.4 2,774,956 + ECD_02653 0.61 +0.7 2,774,984 + ECD_02653 0.63 -1.1 2,774,985 - ECD_02653 0.63 +1.9 2,774,994 + ECD_02653 0.64 -2.2 2,774,994 + ECD_02653 0.64 -0.5 2,775,069 + ECD_02653 0.68 -0.1 2,775,091 - ECD_02653 0.69 -2.9 2,775,181 + ECD_02653 0.74 -0.3 2,775,181 + ECD_02653 0.74 -0.1 2,775,181 + ECD_02653 0.74 -0.5 2,775,181 + ECD_02653 0.74 -2.9 2,775,181 + ECD_02653 0.74 -1.6 2,775,182 - ECD_02653 0.74 -0.5 2,775,415 + ECD_02653 0.87 -0.2 2,775,415 + ECD_02653 0.87 -2.1 2,775,415 + ECD_02653 0.87 -1.5 2,775,415 + ECD_02653 0.87 -1.1 2,775,415 + ECD_02653 0.87 -0.7 2,775,416 - ECD_02653 0.87 -0.8 2,775,416 - ECD_02653 0.87 +0.8 2,775,483 + -0.5 2,775,516 - +3.1 2,775,519 + +3.9 2,775,519 + +0.3 2,775,519 + -0.1 2,775,519 + -0.3 2,775,519 + -0.2 2,775,519 + -0.3 2,775,519 + +2.7 2,775,519 + +2.6 2,775,519 + -1.8 2,775,519 + -0.1 2,775,519 + -0.9 2,775,519 + +0.5 2,775,519 + +3.9 2,775,519 + +0.3 2,775,519 + +2.4 2,775,519 + -0.3 2,775,519 + -1.1 2,775,519 + -0.5 2,775,519 + -1.5 2,775,519 + -1.6 2,775,519 + -0.1 2,775,519 + -0.1 2,775,519 + +3.6 2,775,519 + +0.2 2,775,519 + +2.9 2,775,519 + -0.6 2,775,520 - -0.4 2,775,520 - -1.4 2,775,520 - +0.3 2,775,520 - -2.2 2,775,520 - +2.7 2,775,520 - -1.4 2,775,520 - -1.8 2,775,520 - -1.6 2,775,520 - -1.9 2,775,520 - -1.0 2,775,520 - -0.2 2,775,520 - -1.4 2,775,520 - -0.9 2,775,520 - -0.1 2,775,520 - -0.8 2,775,520 - -0.2 2,775,520 - -1.6 2,775,520 - -1.2 2,775,520 - -1.1 2,775,520 - +3.5 2,775,520 - -2.4 2,775,520 - -1.9 2,775,520 - -0.4 2,775,547 + +0.9 2,775,547 + +2.8 2,775,547 + -0.1 2,775,548 - -0.5 2,775,599 - +0.4 2,775,616 + -1.4 2,775,616 + -0.1 2,775,616 + -0.3 2,775,617 - +1.5 2,775,617 - -0.2 2,775,628 + -0.2 2,775,629 - +0.5 2,775,629 - +0.6 2,775,629 - +0.3 2,775,638 - -4.4 2,775,640 + -1.1 2,775,640 + +0.0 2,775,640 + -1.5 2,775,640 + +0.7 2,775,640 + -0.5 2,775,640 + +2.2 2,775,640 + -0.5 2,775,640 + -0.6 2,775,640 + -0.6 2,775,641 - -0.6 2,775,641 - -0.9 2,775,641 - -0.8 2,775,645 + +2.4 2,775,645 + -1.5 2,775,730 + -0.4 2,775,731 - -0.6 2,775,732 + -0.5 2,775,732 + -0.4 2,775,733 - -0.2 2,775,733 - -0.1 2,775,748 - -1.5 2,775,770 + -2.2 2,775,945 + ECD_02654 0.14 +0.1 2,775,945 + ECD_02654 0.14 -0.9 2,775,946 - ECD_02654 0.14 +2.4 2,776,013 + ECD_02654 0.19 -1.9 2,776,013 + ECD_02654 0.19 +3.0 2,776,014 - ECD_02654 0.19 +2.1 2,776,017 + ECD_02654 0.19 -1.3 2,776,017 + ECD_02654 0.19 +3.4 2,776,018 - ECD_02654 0.19 -0.5 2,776,018 - ECD_02654 0.19 +4.4 2,776,048 - ECD_02654 0.21 -2.1 2,776,225 - ECD_02654 0.34 -0.5 2,776,225 - ECD_02654 0.34 -0.9 2,776,266 + ECD_02654 0.37 -0.4 2,776,266 + ECD_02654 0.37 +0.6 2,776,401 + ECD_02654 0.46 -1.5 2,776,401 + ECD_02654 0.46 -0.1 2,776,402 - ECD_02654 0.46 -0.7 2,776,449 - ECD_02654 0.49 +3.4 2,776,533 + ECD_02654 0.55 -0.4 2,776,534 - ECD_02654 0.55 -0.0 2,776,572 + ECD_02654 0.58 -1.1 2,776,573 - ECD_02654 0.58 -0.6 2,776,583 + ECD_02654 0.59 -0.1 2,776,583 + ECD_02654 0.59 -0.5 2,776,633 + ECD_02654 0.62 -0.0 2,776,633 + ECD_02654 0.62 -0.6 2,776,633 + ECD_02654 0.62 -2.1 2,776,633 + ECD_02654 0.62 +0.9 2,776,633 + ECD_02654 0.62 -0.9 2,776,633 + ECD_02654 0.62 +2.5 2,776,633 + ECD_02654 0.62 -0.6 2,776,633 + ECD_02654 0.62 -0.6 2,776,634 - ECD_02654 0.62 +0.4 2,776,634 - ECD_02654 0.62 +2.3 2,776,634 - ECD_02654 0.62 -0.2 2,776,634 - ECD_02654 0.62 +4.4 2,776,634 - ECD_02654 0.62 +1.3 2,776,634 - ECD_02654 0.62 -1.1 2,776,634 - ECD_02654 0.62 -0.9 2,776,644 + ECD_02654 0.63 -0.5 2,776,644 + ECD_02654 0.63 -1.1 2,776,645 - ECD_02654 0.63 -1.4 2,776,645 - ECD_02654 0.63 -0.9 2,776,781 + ECD_02654 0.73 -0.8 2,776,781 + ECD_02654 0.73 +0.2 2,776,782 - ECD_02654 0.73 -0.1 2,776,822 - ECD_02654 0.76 -0.7 2,776,824 + ECD_02654 0.76 +3.6 2,776,827 + ECD_02654 0.76 -1.3 2,776,866 - ECD_02654 0.79 -2.6 2,776,878 - ECD_02654 0.80 -0.1 2,776,889 + ECD_02654 0.80 -0.4 2,776,931 + ECD_02654 0.83 +0.0 2,776,986 + ECD_02654 0.87 -1.1 2,776,986 + ECD_02654 0.87 +0.0 2,777,076 + -0.5 2,777,122 + +0.4 2,777,128 + -0.6 2,777,151 + +1.8 2,777,154 - -1.1 2,777,190 + -1.3 2,777,363 + ECD_02655 0.46 -0.8 2,777,363 + ECD_02655 0.46 -2.2 2,777,395 - ECD_02655 0.54 -2.1 2,777,421 + ECD_02655 0.60 +0.2 2,777,421 + ECD_02655 0.60 -2.2 2,777,438 - ECD_02655 0.64 -1.8 2,777,452 - ECD_02655 0.67 -2.1 2,777,498 + ECD_02655 0.78 -0.6 2,777,499 - ECD_02655 0.78 -0.4 2,777,560 + +2.7 2,777,588 + -1.2 2,777,596 + -0.7 2,777,596 + -1.7 2,777,647 + -2.3 2,777,673 + -1.3 2,777,695 + +0.3 2,777,695 + -0.2 2,777,695 + -1.1 2,777,741 - ECD_02656 0.13 -0.5 2,777,812 + ECD_02656 0.22 -1.2 2,777,816 + ECD_02656 0.23 -0.7 2,777,816 + ECD_02656 0.23 +0.4 2,777,816 + ECD_02656 0.23 +3.0 2,777,816 + ECD_02656 0.23 -0.6 2,777,817 - ECD_02656 0.23 +2.4 2,777,817 - ECD_02656 0.23 -0.4 2,777,817 - ECD_02656 0.23 -1.7 2,777,818 + ECD_02656 0.23 +0.4 2,777,818 + ECD_02656 0.23 -0.9 2,777,819 - ECD_02656 0.23 +0.1 2,777,876 + ECD_02656 0.31 -1.1 2,777,943 + ECD_02656 0.40 +3.9 2,777,943 + ECD_02656 0.40 +3.3 2,777,966 + ECD_02656 0.43 -0.2 2,778,014 - ECD_02656 0.50 +1.0 2,778,092 + ECD_02656 0.61 -2.6 2,778,092 + ECD_02656 0.61 -1.6 2,778,093 - ECD_02656 0.61 -2.3 2,778,093 - ECD_02656 0.61 -0.6 2,778,101 + ECD_02656 0.62 +0.5 2,778,102 - ECD_02656 0.62 -0.8 2,778,102 - ECD_02656 0.62 -1.3 2,778,102 - ECD_02656 0.62 +0.7 2,778,102 - ECD_02656 0.62 -0.3 2,778,130 + ECD_02656 0.66 +0.2 2,778,131 - ECD_02656 0.66 -0.8
Or see this region's nucleotide sequence