Strain Fitness in Escherichia coli BL21 around ECD_02345

Experiment: Bas52

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02344 and ECD_02345 overlap by 11 nucleotidesECD_02345 and ECD_02346 are separated by 10 nucleotides ECD_02344: ECD_02344 - ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, at 2,432,814 to 2,434,001 _02344 ECD_02345: ECD_02345 - ethanolamine utilization protein, HSP70/actin superfamily protein, at 2,433,991 to 2,434,827 _02345 ECD_02346: ECD_02346 - aldehyde oxidoreductase, ethanolamine utilization protein, at 2,434,838 to 2,436,241 _02346 Position (kb) 2433 2434 2435Strain fitness (log2 ratio) -2 -1 0 1 2at 2433.021 kb on - strand, within ECD_02344at 2433.126 kb on - strand, within ECD_02344at 2433.217 kb on - strand, within ECD_02344at 2433.340 kb on + strand, within ECD_02344at 2433.340 kb on + strand, within ECD_02344at 2433.340 kb on + strand, within ECD_02344at 2433.341 kb on - strand, within ECD_02344at 2433.492 kb on - strand, within ECD_02344at 2433.501 kb on + strand, within ECD_02344at 2434.003 kb on + strandat 2434.003 kb on + strandat 2434.004 kb on - strandat 2434.004 kb on - strandat 2434.054 kb on - strandat 2434.073 kb on - strandat 2434.259 kb on + strand, within ECD_02345at 2434.507 kb on - strand, within ECD_02345at 2434.865 kb on + strandat 2435.421 kb on - strand, within ECD_02346at 2435.567 kb on - strand, within ECD_02346at 2435.582 kb on + strand, within ECD_02346at 2435.812 kb on + strand, within ECD_02346

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
remove
2,433,021 - ECD_02344 0.17 +0.1
2,433,126 - ECD_02344 0.26 +0.6
2,433,217 - ECD_02344 0.34 +0.3
2,433,340 + ECD_02344 0.44 -0.3
2,433,340 + ECD_02344 0.44 +0.3
2,433,340 + ECD_02344 0.44 +2.3
2,433,341 - ECD_02344 0.44 +0.3
2,433,492 - ECD_02344 0.57 +0.4
2,433,501 + ECD_02344 0.58 +0.9
2,434,003 + -1.2
2,434,003 + +1.0
2,434,004 - -1.9
2,434,004 - +0.9
2,434,054 - -0.4
2,434,073 - +1.1
2,434,259 + ECD_02345 0.32 +0.9
2,434,507 - ECD_02345 0.62 +0.7
2,434,865 + +0.8
2,435,421 - ECD_02346 0.42 -0.9
2,435,567 - ECD_02346 0.52 -0.7
2,435,582 + ECD_02346 0.53 -0.9
2,435,812 + ECD_02346 0.69 -0.2

Or see this region's nucleotide sequence