Strain Fitness in Escherichia coli BL21 around ECD_02195

Experiment: Bas52

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02192 and ECD_02193 are separated by 78 nucleotidesECD_02193 and ECD_02194 are separated by 54 nucleotidesECD_02194 and ECD_02195 are separated by 64 nucleotidesECD_02195 and ECD_02196 are separated by 187 nucleotides ECD_02192: ECD_02192 - isochorismate synthase 2, at 2,269,522 to 2,270,817 _02192 ECD_02193: ECD_02193 - putative membrane-anchored DUF883 family ribosome-binding protein, at 2,270,896 to 2,271,201 _02193 ECD_02194: ECD_02194 - GNAT family putative N-acetyltransferase, at 2,271,256 to 2,271,717 _02194 ECD_02195: ECD_02195 - RNase BN, tRNA processing enzyme, at 2,271,782 to 2,272,699 _02195 ECD_02196: ECD_02196 - protease, capable of cleaving an AMC-ubiquitin model substrate, at 2,272,887 to 2,274,098 _02196 Position (kb) 2271 2272 2273Strain fitness (log2 ratio) -2 -1 0 1 2at 2270.806 kb on - strandat 2270.921 kb on - strandat 2270.979 kb on - strand, within ECD_02193at 2270.979 kb on - strand, within ECD_02193at 2271.015 kb on - strand, within ECD_02193at 2271.018 kb on - strand, within ECD_02193at 2271.018 kb on - strand, within ECD_02193at 2271.018 kb on - strand, within ECD_02193at 2271.018 kb on - strand, within ECD_02193at 2271.018 kb on - strand, within ECD_02193at 2271.095 kb on + strand, within ECD_02193at 2271.180 kb on + strandat 2271.234 kb on - strandat 2271.237 kb on + strandat 2271.238 kb on - strandat 2271.238 kb on - strandat 2271.311 kb on + strand, within ECD_02194at 2271.347 kb on + strand, within ECD_02194at 2271.409 kb on - strand, within ECD_02194at 2271.666 kb on - strand, within ECD_02194at 2271.718 kb on - strandat 2271.737 kb on + strandat 2271.737 kb on + strandat 2271.738 kb on - strandat 2271.738 kb on - strandat 2271.738 kb on - strandat 2271.745 kb on - strandat 2272.025 kb on - strand, within ECD_02195at 2272.218 kb on - strand, within ECD_02195at 2272.229 kb on - strand, within ECD_02195at 2272.258 kb on - strand, within ECD_02195at 2272.273 kb on - strand, within ECD_02195at 2272.375 kb on - strand, within ECD_02195at 2272.375 kb on - strand, within ECD_02195at 2272.491 kb on + strand, within ECD_02195at 2272.759 kb on - strandat 2272.759 kb on - strandat 2272.799 kb on + strandat 2273.040 kb on - strand, within ECD_02196

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
remove
2,270,806 - +0.3
2,270,921 - +0.1
2,270,979 - ECD_02193 0.27 +1.0
2,270,979 - ECD_02193 0.27 -1.8
2,271,015 - ECD_02193 0.39 +1.1
2,271,018 - ECD_02193 0.40 +0.6
2,271,018 - ECD_02193 0.40 +0.7
2,271,018 - ECD_02193 0.40 +2.1
2,271,018 - ECD_02193 0.40 -0.3
2,271,018 - ECD_02193 0.40 +1.5
2,271,095 + ECD_02193 0.65 -0.9
2,271,180 + +0.1
2,271,234 - +0.1
2,271,237 + +0.5
2,271,238 - -0.5
2,271,238 - -0.2
2,271,311 + ECD_02194 0.12 -0.4
2,271,347 + ECD_02194 0.20 +1.2
2,271,409 - ECD_02194 0.33 +0.7
2,271,666 - ECD_02194 0.89 -0.2
2,271,718 - +0.7
2,271,737 + -0.1
2,271,737 + +0.6
2,271,738 - -1.0
2,271,738 - -1.7
2,271,738 - +0.2
2,271,745 - +0.3
2,272,025 - ECD_02195 0.26 +2.6
2,272,218 - ECD_02195 0.47 -0.5
2,272,229 - ECD_02195 0.49 -0.8
2,272,258 - ECD_02195 0.52 -0.1
2,272,273 - ECD_02195 0.53 -1.2
2,272,375 - ECD_02195 0.65 -1.0
2,272,375 - ECD_02195 0.65 +0.7
2,272,491 + ECD_02195 0.77 +0.1
2,272,759 - +0.7
2,272,759 - -0.8
2,272,799 + +0.2
2,273,040 - ECD_02196 0.13 +1.7

Or see this region's nucleotide sequence