Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02128 and ECD_02129 are separated by 12 nucleotides ECD_02129 and ECD_02130 are separated by 9 nucleotides ECD_02130 and ECD_02131 overlap by 4 nucleotides ECD_02131 and ECD_02132 overlap by 14 nucleotides
ECD_02128: ECD_02128 - heme export ABC transporter ATPase, at 2,190,671 to 2,191,294
_02128
ECD_02129: ECD_02129 - quinol dehydrogenase, electron source for NapAB, at 2,191,307 to 2,191,909
_02129
ECD_02130: ECD_02130 - nitrate reductase, small, cytochrome C550 subunit, periplasmic, at 2,191,919 to 2,192,368
_02130
ECD_02131: ECD_02131 - ferredoxin-type protein, at 2,192,365 to 2,193,228
_02131
ECD_02132: ECD_02132 - ferredoxin-type protein, at 2,193,215 to 2,193,910
_02132
Position (kb)
2191
2192
2193 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2190.926 kb on - strand, within ECD_02128 at 2190.996 kb on + strand, within ECD_02128 at 2190.997 kb on - strand, within ECD_02128 at 2191.223 kb on - strand, within ECD_02128 at 2191.242 kb on - strand at 2191.242 kb on - strand at 2191.269 kb on - strand at 2191.269 kb on - strand at 2191.372 kb on + strand, within ECD_02129 at 2191.444 kb on + strand, within ECD_02129 at 2191.578 kb on + strand, within ECD_02129 at 2191.578 kb on + strand, within ECD_02129 at 2191.578 kb on + strand, within ECD_02129 at 2191.579 kb on - strand, within ECD_02129 at 2191.680 kb on + strand, within ECD_02129 at 2191.681 kb on - strand, within ECD_02129 at 2191.698 kb on + strand, within ECD_02129 at 2191.735 kb on + strand, within ECD_02129 at 2191.736 kb on - strand, within ECD_02129 at 2191.891 kb on + strand at 2191.892 kb on - strand at 2191.913 kb on - strand at 2192.132 kb on - strand, within ECD_02130 at 2192.190 kb on + strand, within ECD_02130 at 2192.395 kb on - strand at 2192.403 kb on + strand at 2192.403 kb on + strand at 2192.404 kb on - strand at 2192.404 kb on - strand at 2192.408 kb on - strand at 2192.408 kb on - strand at 2192.408 kb on - strand at 2192.408 kb on - strand at 2192.504 kb on - strand, within ECD_02131 at 2192.504 kb on - strand, within ECD_02131 at 2192.610 kb on - strand, within ECD_02131 at 2192.663 kb on - strand, within ECD_02131 at 2192.689 kb on - strand, within ECD_02131 at 2192.777 kb on - strand, within ECD_02131 at 2192.879 kb on - strand, within ECD_02131 at 2193.069 kb on - strand, within ECD_02131 at 2193.266 kb on + strand at 2193.266 kb on + strand at 2193.267 kb on - strand at 2193.340 kb on + strand, within ECD_02132
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 2,190,926 - ECD_02128 0.41 -1.1 2,190,996 + ECD_02128 0.52 +0.2 2,190,997 - ECD_02128 0.52 +1.0 2,191,223 - ECD_02128 0.88 -0.1 2,191,242 - +0.4 2,191,242 - -0.4 2,191,269 - +3.5 2,191,269 - +0.0 2,191,372 + ECD_02129 0.11 -0.1 2,191,444 + ECD_02129 0.23 +0.0 2,191,578 + ECD_02129 0.45 +1.0 2,191,578 + ECD_02129 0.45 -0.1 2,191,578 + ECD_02129 0.45 -0.6 2,191,579 - ECD_02129 0.45 +1.2 2,191,680 + ECD_02129 0.62 +0.2 2,191,681 - ECD_02129 0.62 +0.2 2,191,698 + ECD_02129 0.65 +0.9 2,191,735 + ECD_02129 0.71 -0.0 2,191,736 - ECD_02129 0.71 -0.3 2,191,891 + +1.1 2,191,892 - +0.4 2,191,913 - +0.0 2,192,132 - ECD_02130 0.47 +0.1 2,192,190 + ECD_02130 0.60 -1.5 2,192,395 - -0.5 2,192,403 + +0.8 2,192,403 + +0.8 2,192,404 - -0.1 2,192,404 - -1.3 2,192,408 - -0.6 2,192,408 - -0.5 2,192,408 - +0.5 2,192,408 - +1.1 2,192,504 - ECD_02131 0.16 +0.6 2,192,504 - ECD_02131 0.16 -0.2 2,192,610 - ECD_02131 0.28 -0.5 2,192,663 - ECD_02131 0.34 -0.8 2,192,689 - ECD_02131 0.38 +0.2 2,192,777 - ECD_02131 0.48 +0.2 2,192,879 - ECD_02131 0.59 -0.2 2,193,069 - ECD_02131 0.81 -2.5 2,193,266 + -0.9 2,193,266 + +0.7 2,193,267 - -0.4 2,193,340 + ECD_02132 0.18 -0.2
Or see this region's nucleotide sequence