Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01840 and ECD_01841 are separated by 40 nucleotides ECD_01841 and ECD_01842 overlap by 4 nucleotides ECD_01842 and ECD_01843 are separated by 164 nucleotides
ECD_01840: ECD_01840 - MAPEG family inner membrane protein, at 1,898,184 to 1,898,579
_01840
ECD_01841: ECD_01841 - carboxy-SAM synthase, at 1,898,620 to 1,899,363
_01841
ECD_01842: ECD_01842 - tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent, at 1,899,360 to 1,900,331
_01842
ECD_01843: ECD_01843 - trimethylamine N-oxide reductase system III, catalytic subunit, at 1,900,496 to 1,902,925
_01843
Position (kb)
1899
1900
1901 Strain fitness (log2 ratio)
-1
0
1
2 at 1898.546 kb on + strand at 1898.587 kb on + strand at 1898.587 kb on + strand at 1898.734 kb on + strand, within ECD_01841 at 1898.760 kb on + strand, within ECD_01841 at 1898.761 kb on - strand, within ECD_01841 at 1898.922 kb on + strand, within ECD_01841 at 1898.951 kb on + strand, within ECD_01841 at 1899.444 kb on - strand at 1899.522 kb on + strand, within ECD_01842 at 1899.587 kb on + strand, within ECD_01842 at 1899.648 kb on + strand, within ECD_01842 at 1900.450 kb on + strand at 1900.552 kb on - strand at 1900.880 kb on - strand, within ECD_01843 at 1900.988 kb on - strand, within ECD_01843
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 1,898,546 + +0.5 1,898,587 + +1.2 1,898,587 + -0.8 1,898,734 + ECD_01841 0.15 +1.0 1,898,760 + ECD_01841 0.19 +1.9 1,898,761 - ECD_01841 0.19 +1.5 1,898,922 + ECD_01841 0.41 +1.4 1,898,951 + ECD_01841 0.44 +0.3 1,899,444 - +1.3 1,899,522 + ECD_01842 0.17 +1.4 1,899,587 + ECD_01842 0.23 +1.2 1,899,648 + ECD_01842 0.30 +0.7 1,900,450 + +1.1 1,900,552 - -0.9 1,900,880 - ECD_01843 0.16 -0.8 1,900,988 - ECD_01843 0.20 -0.8
Or see this region's nucleotide sequence