Strain Fitness in Escherichia coli BL21 around ECD_01630

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01629 and ECD_01630 overlap by 4 nucleotidesECD_01630 and ECD_01631 are separated by 112 nucleotides ECD_01629: ECD_01629 - transcriptional repressor, hypoxanthine-binding, at 1,683,113 to 1,684,138 _01629 ECD_01630: ECD_01630 - LysR family putative transcriptional regulator, at 1,684,135 to 1,685,067 _01630 ECD_01631: ECD_01631 - putative arabinose efflux transporter, at 1,685,180 to 1,686,391 _01631 Position (kb) 1684 1685 1686Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1683.157 kb on + strandat 1683.712 kb on + strand, within ECD_01629at 1683.712 kb on + strand, within ECD_01629at 1684.504 kb on - strand, within ECD_01630at 1684.504 kb on - strand, within ECD_01630at 1684.750 kb on - strand, within ECD_01630at 1685.177 kb on + strandat 1685.177 kb on + strandat 1685.177 kb on + strandat 1685.177 kb on + strandat 1685.177 kb on + strandat 1685.252 kb on + strandat 1685.904 kb on + strand, within ECD_01631at 1685.909 kb on + strand, within ECD_01631

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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1,683,157 + -1.9
1,683,712 + ECD_01629 0.58 -2.7
1,683,712 + ECD_01629 0.58 -3.4
1,684,504 - ECD_01630 0.40 +1.4
1,684,504 - ECD_01630 0.40 +1.1
1,684,750 - ECD_01630 0.66 -0.1
1,685,177 + +1.1
1,685,177 + +1.4
1,685,177 + +1.7
1,685,177 + +1.5
1,685,177 + +2.8
1,685,252 + +2.1
1,685,904 + ECD_01631 0.60 +0.7
1,685,909 + ECD_01631 0.60 +3.1

Or see this region's nucleotide sequence