Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01432 and ECD_01433 are separated by 12 nucleotides ECD_01433 and ECD_01434 overlap by 8 nucleotides ECD_01434 and ECD_01435 are separated by 194 nucleotides ECD_01435 and ECD_01436 are separated by 145 nucleotides
ECD_01432: ECD_01432 - formate dehydrogenase-N, alpha subunit, nitrate-inducible, at 1,503,081 to 1,506,128
_01432
ECD_01433: ECD_01433 - formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible, at 1,506,141 to 1,507,025
_01433
ECD_01434: ECD_01434 - formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible, at 1,507,018 to 1,507,671
_01434
ECD_01435: ECD_01435 - putative DNA-binding transcriptional regulator, at 1,507,866 to 1,508,150
_01435
ECD_01436: ECD_01436 - ethanol-active dehydrogenase/acetaldehyde-active reductase, at 1,508,296 to 1,509,306
_01436
Position (kb) 1507
1508 Strain fitness (log2 ratio) -1
0
1 at 1506.612 kb on + strand, within ECD_01433 at 1507.342 kb on + strand, within ECD_01434 at 1507.528 kb on + strand, within ECD_01434 at 1507.529 kb on - strand, within ECD_01434 at 1507.989 kb on - strand, within ECD_01435 at 1508.091 kb on - strand, within ECD_01435 at 1508.593 kb on - strand, within ECD_01436
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 1,506,612 + ECD_01433 0.53 +0.6 1,507,342 + ECD_01434 0.50 +0.7 1,507,528 + ECD_01434 0.78 -1.2 1,507,529 - ECD_01434 0.78 +0.1 1,507,989 - ECD_01435 0.43 -0.5 1,508,091 - ECD_01435 0.79 -0.5 1,508,593 - ECD_01436 0.29 -1.1
Or see this region's nucleotide sequence