Strain Fitness in Escherichia coli BL21 around ECD_01381

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01380 and ECD_01381 are separated by 254 nucleotidesECD_01381 and ECD_01382 overlap by 80 nucleotidesECD_01382 and ECD_01383 are separated by 15 nucleotidesECD_01383 and ECD_01384 are separated by 62 nucleotidesECD_01384 and ECD_01385 overlap by 9 nucleotides ECD_01380: ECD_01380 - putative metalloenzyme, at 1,449,350 to 1,450,693 _01380 ECD_01381: ECD_01381 - OPG biosynthetic periplasmic protein, at 1,450,948 to 1,452,573 _01381 ECD_01382: ECD_01382 - hypothetical protein, at 1,452,494 to 1,452,697 _01382 ECD_01383: ECD_01383 - DUF465 family protein, at 1,452,713 to 1,452,937 _01383 ECD_01384: ECD_01384 - ribosomal-protein-L7/L12-serine acetyltransferase, at 1,453,000 to 1,453,539 _01384 ECD_01385: ECD_01385 - uncharacterized protein, at 1,453,531 to 1,454,511 _01385 Position (kb) 1450 1451 1452 1453Strain fitness (log2 ratio) -2 -1 0 1 2at 1450.846 kb on + strandat 1451.160 kb on + strand, within ECD_01381at 1451.174 kb on - strand, within ECD_01381at 1451.269 kb on - strand, within ECD_01381at 1451.438 kb on + strand, within ECD_01381at 1451.438 kb on + strand, within ECD_01381at 1451.481 kb on + strand, within ECD_01381at 1451.485 kb on + strand, within ECD_01381at 1451.527 kb on + strand, within ECD_01381at 1451.528 kb on - strand, within ECD_01381at 1451.599 kb on - strand, within ECD_01381at 1451.707 kb on + strand, within ECD_01381at 1451.707 kb on + strand, within ECD_01381at 1451.973 kb on + strand, within ECD_01381at 1452.388 kb on - strand, within ECD_01381at 1452.469 kb on + strandat 1452.469 kb on + strandat 1452.469 kb on + strandat 1452.470 kb on - strandat 1452.517 kb on + strandat 1452.547 kb on + strandat 1452.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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1,450,846 + -1.6
1,451,160 + ECD_01381 0.13 -2.3
1,451,174 - ECD_01381 0.14 +1.0
1,451,269 - ECD_01381 0.20 -0.0
1,451,438 + ECD_01381 0.30 +0.8
1,451,438 + ECD_01381 0.30 +1.0
1,451,481 + ECD_01381 0.33 +0.4
1,451,485 + ECD_01381 0.33 +0.6
1,451,527 + ECD_01381 0.36 +0.7
1,451,528 - ECD_01381 0.36 +1.7
1,451,599 - ECD_01381 0.40 +0.5
1,451,707 + ECD_01381 0.47 +0.8
1,451,707 + ECD_01381 0.47 +1.1
1,451,973 + ECD_01381 0.63 +1.7
1,452,388 - ECD_01381 0.89 +1.1
1,452,469 + +1.1
1,452,469 + +0.8
1,452,469 + +1.1
1,452,470 - +2.2
1,452,517 + +0.4
1,452,547 + +0.7
1,452,572 - +0.1

Or see this region's nucleotide sequence