Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00935 and ECD_00936 are separated by 265 nucleotides ECD_00936 and ECD_00937 are separated by 42 nucleotides ECD_00937 and ECD_00938 overlap by 4 nucleotides
ECD_00935: ECD_00935 - nicotinate phosphoribosyltransferase, at 994,243 to 995,445
_00935
ECD_00936: ECD_00936 - aminopeptidase N, at 995,711 to 998,323
_00936
ECD_00937: ECD_00937 - aliphatic sulfonate ABC transporter ATPase, at 998,366 to 999,133
_00937
ECD_00938: ECD_00938 - aliphatic sulfonate ABC transporter permease, at 999,130 to 999,921
_00938
Position (kb) 995
996
997
998
999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 995.048 kb on - strand, within ECD_00935 at 995.191 kb on - strand, within ECD_00935 at 995.196 kb on - strand, within ECD_00935 at 995.206 kb on - strand, within ECD_00935 at 995.287 kb on - strand, within ECD_00935 at 995.355 kb on - strand at 995.355 kb on - strand at 995.357 kb on + strand at 995.358 kb on - strand at 995.382 kb on + strand at 995.383 kb on - strand at 995.392 kb on - strand at 995.394 kb on - strand at 995.394 kb on - strand at 995.445 kb on + strand at 995.445 kb on + strand at 995.468 kb on - strand at 995.512 kb on + strand at 995.512 kb on + strand at 995.515 kb on - strand at 995.588 kb on - strand at 995.588 kb on - strand at 995.687 kb on + strand at 995.699 kb on + strand at 995.905 kb on + strand at 996.094 kb on + strand, within ECD_00936 at 996.094 kb on + strand, within ECD_00936 at 996.101 kb on + strand, within ECD_00936 at 996.164 kb on + strand, within ECD_00936 at 996.458 kb on + strand, within ECD_00936 at 996.458 kb on + strand, within ECD_00936 at 996.461 kb on - strand, within ECD_00936 at 996.461 kb on - strand, within ECD_00936 at 996.572 kb on + strand, within ECD_00936 at 996.727 kb on + strand, within ECD_00936 at 996.744 kb on + strand, within ECD_00936 at 996.836 kb on + strand, within ECD_00936 at 997.070 kb on + strand, within ECD_00936 at 997.179 kb on - strand, within ECD_00936 at 997.342 kb on + strand, within ECD_00936 at 997.342 kb on + strand, within ECD_00936 at 997.433 kb on + strand, within ECD_00936 at 997.433 kb on + strand, within ECD_00936 at 997.648 kb on + strand, within ECD_00936 at 997.649 kb on - strand, within ECD_00936 at 997.837 kb on + strand, within ECD_00936 at 997.951 kb on + strand, within ECD_00936 at 998.053 kb on + strand, within ECD_00936 at 998.294 kb on + strand at 998.304 kb on + strand at 998.577 kb on - strand, within ECD_00937 at 998.578 kb on - strand, within ECD_00937 at 998.582 kb on - strand, within ECD_00937 at 998.637 kb on - strand, within ECD_00937 at 999.084 kb on - strand at 999.128 kb on - strand at 999.238 kb on - strand, within ECD_00938
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 995,048 - ECD_00935 0.67 +3.0 995,191 - ECD_00935 0.79 +1.1 995,196 - ECD_00935 0.79 +0.9 995,206 - ECD_00935 0.80 +0.7 995,287 - ECD_00935 0.87 +2.0 995,355 - +0.2 995,355 - +0.4 995,357 + +0.8 995,358 - -0.1 995,382 + +1.2 995,383 - +0.9 995,392 - +1.1 995,394 - +1.1 995,394 - +0.6 995,445 + -1.0 995,445 + +0.6 995,468 - +1.3 995,512 + +0.5 995,512 + +1.4 995,515 - +0.4 995,588 - +0.8 995,588 - +0.6 995,687 + -1.5 995,699 + -0.3 995,905 + +0.6 996,094 + ECD_00936 0.15 -0.4 996,094 + ECD_00936 0.15 -1.7 996,101 + ECD_00936 0.15 +0.5 996,164 + ECD_00936 0.17 -1.3 996,458 + ECD_00936 0.29 -0.5 996,458 + ECD_00936 0.29 -1.0 996,461 - ECD_00936 0.29 -1.3 996,461 - ECD_00936 0.29 -0.7 996,572 + ECD_00936 0.33 -1.1 996,727 + ECD_00936 0.39 -1.3 996,744 + ECD_00936 0.40 -0.5 996,836 + ECD_00936 0.43 +0.9 997,070 + ECD_00936 0.52 -3.2 997,179 - ECD_00936 0.56 -1.3 997,342 + ECD_00936 0.62 -0.7 997,342 + ECD_00936 0.62 +0.3 997,433 + ECD_00936 0.66 -0.7 997,433 + ECD_00936 0.66 +1.9 997,648 + ECD_00936 0.74 +1.0 997,649 - ECD_00936 0.74 -2.9 997,837 + ECD_00936 0.81 -0.4 997,951 + ECD_00936 0.86 +0.3 998,053 + ECD_00936 0.90 +0.8 998,294 + -0.4 998,304 + -0.8 998,577 - ECD_00937 0.27 -0.0 998,578 - ECD_00937 0.28 +0.1 998,582 - ECD_00937 0.28 +0.9 998,637 - ECD_00937 0.35 +0.5 999,084 - -0.9 999,128 - -1.1 999,238 - ECD_00938 0.14 -0.5
Or see this region's nucleotide sequence