Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00903 and ECD_00904 are separated by 0 nucleotides ECD_00904 and ECD_00905 are separated by 99 nucleotides ECD_00905 and ECD_00906 are separated by 81 nucleotides
ECD_00903: ECD_00903 - putative transporter, at 952,320 to 953,750
_00903
ECD_00904: ECD_00904 - LysR family putative transcriptional regulator, at 953,751 to 954,659
_00904
ECD_00905: ECD_00905 - putative NAD(P)H-dependent oxidoreductase, at 954,759 to 955,349
_00905
ECD_00906: ECD_00906 - pyruvate formate-lyase 1-activating enzyme; [formate-C-acetyltransferase 1]-activating enzyme; PFL activase, at 955,431 to 956,171
_00906
Position (kb) 953
954
955 Strain fitness (log2 ratio) -1
0
1 at 952.808 kb on + strand, within ECD_00903 at 953.745 kb on - strand at 953.833 kb on + strand at 953.833 kb on + strand at 953.833 kb on + strand at 953.833 kb on + strand at 954.165 kb on + strand, within ECD_00904 at 954.545 kb on + strand, within ECD_00904 at 954.753 kb on - strand at 954.821 kb on + strand, within ECD_00905 at 955.345 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 952,808 + ECD_00903 0.34 -0.1 953,745 - +0.5 953,833 + +0.1 953,833 + +0.7 953,833 + +1.6 953,833 + -0.9 954,165 + ECD_00904 0.46 +1.4 954,545 + ECD_00904 0.87 +1.3 954,753 - +0.4 954,821 + ECD_00905 0.10 +0.6 955,345 + +0.3
Or see this region's nucleotide sequence