Strain Fitness in Escherichia coli BL21 around ECD_00309

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00307 and ECD_00308 are separated by 101 nucleotidesECD_00308 and ECD_00309 are separated by 225 nucleotidesECD_00309 and ECD_00310 are separated by 92 nucleotides ECD_00307: ECD_00307 - 3-hydroxyphenylpropionic transporter, at 344,794 to 346,005 _00307 ECD_00308: ECD_00308 - DUF2058 family protein, at 346,107 to 346,646 _00308 ECD_00309: ECD_00309 - S-formylglutathione hydrolase, at 346,872 to 347,705 _00309 ECD_00310: ECD_00310 - alcohol dehydrogenase class III; glutathione-dependent formaldehyde dehydrogenase, at 347,798 to 348,907 _00310 Position (kb) 346 347 348Strain fitness (log2 ratio) -2 -1 0 1 2at 345.984 kb on - strandat 346.013 kb on + strandat 346.014 kb on - strandat 346.016 kb on + strandat 346.046 kb on + strandat 346.123 kb on + strandat 346.150 kb on + strandat 346.241 kb on + strand, within ECD_00308at 346.274 kb on + strand, within ECD_00308at 346.311 kb on + strand, within ECD_00308at 346.313 kb on + strand, within ECD_00308at 346.313 kb on + strand, within ECD_00308at 346.334 kb on + strand, within ECD_00308at 346.445 kb on + strand, within ECD_00308at 346.488 kb on - strand, within ECD_00308at 346.500 kb on + strand, within ECD_00308at 346.556 kb on + strand, within ECD_00308at 346.558 kb on + strand, within ECD_00308at 346.558 kb on + strand, within ECD_00308at 346.645 kb on - strandat 346.650 kb on + strandat 346.650 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.655 kb on - strandat 346.655 kb on - strandat 346.868 kb on - strandat 346.880 kb on + strandat 346.908 kb on - strandat 346.937 kb on - strandat 347.114 kb on - strand, within ECD_00309at 347.146 kb on + strand, within ECD_00309at 347.221 kb on + strand, within ECD_00309at 347.221 kb on + strand, within ECD_00309at 347.322 kb on + strand, within ECD_00309at 347.323 kb on - strand, within ECD_00309at 347.346 kb on - strand, within ECD_00309at 347.347 kb on + strand, within ECD_00309at 347.348 kb on - strand, within ECD_00309at 347.354 kb on - strand, within ECD_00309at 347.362 kb on + strand, within ECD_00309at 347.399 kb on - strand, within ECD_00309at 347.483 kb on + strand, within ECD_00309at 347.483 kb on + strand, within ECD_00309at 347.522 kb on + strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.647 kb on + strandat 347.713 kb on + strandat 347.756 kb on + strandat 347.756 kb on + strandat 347.756 kb on + strandat 347.756 kb on + strandat 347.756 kb on + strandat 347.757 kb on - strandat 347.784 kb on - strandat 347.785 kb on + strandat 347.879 kb on - strandat 347.879 kb on - strandat 347.879 kb on - strandat 348.130 kb on + strand, within ECD_00310at 348.361 kb on + strand, within ECD_00310at 348.362 kb on - strand, within ECD_00310at 348.477 kb on + strand, within ECD_00310at 348.478 kb on - strand, within ECD_00310at 348.505 kb on - strand, within ECD_00310at 348.510 kb on + strand, within ECD_00310at 348.645 kb on + strand, within ECD_00310

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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345,984 - -2.5
346,013 + +0.2
346,014 - +0.4
346,016 + +0.2
346,046 + +0.9
346,123 + +0.8
346,150 + +0.4
346,241 + ECD_00308 0.25 -0.5
346,274 + ECD_00308 0.31 +0.9
346,311 + ECD_00308 0.38 -0.6
346,313 + ECD_00308 0.38 +0.7
346,313 + ECD_00308 0.38 -0.3
346,334 + ECD_00308 0.42 -0.2
346,445 + ECD_00308 0.63 +0.9
346,488 - ECD_00308 0.71 -1.1
346,500 + ECD_00308 0.73 -0.3
346,556 + ECD_00308 0.83 +0.6
346,558 + ECD_00308 0.84 +1.5
346,558 + ECD_00308 0.84 +2.4
346,645 - +1.4
346,650 + +0.8
346,650 + -0.2
346,654 + +1.1
346,654 + -2.6
346,654 + +0.6
346,654 + +0.9
346,654 + +1.8
346,654 + -1.1
346,655 - +0.3
346,655 - +1.7
346,868 - +1.4
346,880 + +0.6
346,908 - +0.5
346,937 - -0.3
347,114 - ECD_00309 0.29 -0.7
347,146 + ECD_00309 0.33 -0.1
347,221 + ECD_00309 0.42 +1.0
347,221 + ECD_00309 0.42 -0.4
347,322 + ECD_00309 0.54 +0.4
347,323 - ECD_00309 0.54 -0.1
347,346 - ECD_00309 0.57 +0.6
347,347 + ECD_00309 0.57 +1.2
347,348 - ECD_00309 0.57 +0.6
347,354 - ECD_00309 0.58 -0.1
347,362 + ECD_00309 0.59 -0.2
347,399 - ECD_00309 0.63 -0.5
347,483 + ECD_00309 0.73 +1.6
347,483 + ECD_00309 0.73 +1.2
347,522 + ECD_00309 0.78 -0.1
347,567 - ECD_00309 0.83 -0.1
347,567 - ECD_00309 0.83 -1.1
347,567 - ECD_00309 0.83 +0.5
347,567 - ECD_00309 0.83 -0.6
347,647 + +0.4
347,713 + +0.4
347,756 + -0.2
347,756 + +0.8
347,756 + +2.4
347,756 + -0.1
347,756 + -0.2
347,757 - +0.1
347,784 - -0.4
347,785 + -0.5
347,879 - +0.8
347,879 - +0.1
347,879 - +0.9
348,130 + ECD_00310 0.30 -0.6
348,361 + ECD_00310 0.51 +1.0
348,362 - ECD_00310 0.51 -0.4
348,477 + ECD_00310 0.61 -0.4
348,478 - ECD_00310 0.61 -1.7
348,505 - ECD_00310 0.64 -0.1
348,510 + ECD_00310 0.64 +1.5
348,645 + ECD_00310 0.76 +0.4

Or see this region's nucleotide sequence