Strain Fitness in Escherichia coli BL21 around ECD_04267

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04266 and ECD_04267 are separated by 306 nucleotidesECD_04267 and ECD_04268 are separated by 210 nucleotides ECD_04266: ECD_04266 - trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor, at 4,544,670 to 4,545,902 _04266 ECD_04267: ECD_04267 - energy-dependent translational throttle A, at 4,546,209 to 4,547,876 _04267 ECD_04268: ECD_04268 - lytic murein transglycosylase, soluble, at 4,548,087 to 4,550,024 _04268 Position (kb) 4546 4547 4548Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4545.225 kb on + strand, within ECD_04266at 4545.225 kb on + strand, within ECD_04266at 4545.225 kb on + strand, within ECD_04266at 4545.225 kb on + strand, within ECD_04266at 4545.226 kb on - strand, within ECD_04266at 4545.226 kb on - strand, within ECD_04266at 4545.227 kb on + strand, within ECD_04266at 4545.228 kb on - strand, within ECD_04266at 4545.228 kb on - strand, within ECD_04266at 4545.273 kb on - strand, within ECD_04266at 4545.330 kb on + strand, within ECD_04266at 4545.330 kb on + strand, within ECD_04266at 4545.330 kb on + strand, within ECD_04266at 4545.331 kb on - strand, within ECD_04266at 4545.332 kb on + strand, within ECD_04266at 4545.332 kb on + strand, within ECD_04266at 4545.333 kb on - strand, within ECD_04266at 4545.333 kb on - strand, within ECD_04266at 4545.333 kb on - strand, within ECD_04266at 4545.361 kb on + strand, within ECD_04266at 4545.361 kb on + strand, within ECD_04266at 4545.429 kb on - strand, within ECD_04266at 4545.468 kb on + strand, within ECD_04266at 4545.633 kb on + strand, within ECD_04266at 4545.840 kb on + strandat 4546.039 kb on + strandat 4546.039 kb on + strandat 4546.040 kb on - strandat 4546.050 kb on + strandat 4546.122 kb on + strandat 4546.123 kb on - strandat 4546.147 kb on - strandat 4546.210 kb on + strandat 4546.211 kb on - strandat 4546.279 kb on + strandat 4546.280 kb on - strandat 4546.302 kb on - strandat 4546.322 kb on + strandat 4546.359 kb on - strandat 4546.578 kb on - strand, within ECD_04267at 4546.597 kb on + strand, within ECD_04267at 4546.634 kb on + strand, within ECD_04267at 4546.886 kb on + strand, within ECD_04267at 4547.037 kb on - strand, within ECD_04267at 4547.037 kb on - strand, within ECD_04267at 4547.037 kb on - strand, within ECD_04267at 4547.078 kb on + strand, within ECD_04267at 4547.078 kb on + strand, within ECD_04267at 4547.146 kb on + strand, within ECD_04267at 4547.147 kb on - strand, within ECD_04267at 4547.165 kb on + strand, within ECD_04267at 4547.219 kb on - strand, within ECD_04267at 4547.232 kb on - strand, within ECD_04267at 4547.425 kb on - strand, within ECD_04267at 4547.425 kb on - strand, within ECD_04267at 4547.452 kb on - strand, within ECD_04267at 4547.462 kb on + strand, within ECD_04267at 4547.463 kb on - strand, within ECD_04267at 4547.554 kb on + strand, within ECD_04267at 4547.709 kb on - strand, within ECD_04267at 4547.709 kb on - strand, within ECD_04267at 4547.724 kb on - strandat 4547.739 kb on - strandat 4547.858 kb on + strandat 4547.858 kb on + strandat 4547.858 kb on + strandat 4547.859 kb on - strandat 4547.859 kb on - strandat 4547.931 kb on - strandat 4547.931 kb on - strandat 4547.976 kb on + strandat 4547.976 kb on + strandat 4547.977 kb on - strandat 4548.006 kb on + strandat 4548.029 kb on + strandat 4548.029 kb on + strandat 4548.029 kb on + strandat 4548.030 kb on - strandat 4548.030 kb on - strandat 4548.030 kb on - strandat 4548.036 kb on - strandat 4548.063 kb on + strandat 4548.063 kb on + strandat 4548.063 kb on + strandat 4548.063 kb on + strandat 4548.063 kb on + strandat 4548.064 kb on - strandat 4548.064 kb on - strandat 4548.067 kb on + strandat 4548.073 kb on + strandat 4548.345 kb on - strand, within ECD_04268at 4548.345 kb on - strand, within ECD_04268at 4548.443 kb on - strand, within ECD_04268at 4548.486 kb on - strand, within ECD_04268at 4548.486 kb on - strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.490 kb on - strand, within ECD_04268at 4548.490 kb on - strand, within ECD_04268at 4548.490 kb on - strand, within ECD_04268at 4548.492 kb on + strand, within ECD_04268at 4548.592 kb on + strand, within ECD_04268at 4548.592 kb on + strand, within ECD_04268at 4548.592 kb on + strand, within ECD_04268at 4548.593 kb on - strand, within ECD_04268at 4548.596 kb on + strand, within ECD_04268at 4548.636 kb on + strand, within ECD_04268at 4548.641 kb on - strand, within ECD_04268at 4548.685 kb on + strand, within ECD_04268at 4548.761 kb on + strand, within ECD_04268

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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4,545,225 + ECD_04266 0.45 +0.2
4,545,225 + ECD_04266 0.45 -0.0
4,545,225 + ECD_04266 0.45 -2.3
4,545,225 + ECD_04266 0.45 +0.1
4,545,226 - ECD_04266 0.45 +0.7
4,545,226 - ECD_04266 0.45 -0.7
4,545,227 + ECD_04266 0.45 -1.9
4,545,228 - ECD_04266 0.45 -0.6
4,545,228 - ECD_04266 0.45 -1.0
4,545,273 - ECD_04266 0.49 -1.3
4,545,330 + ECD_04266 0.54 -0.8
4,545,330 + ECD_04266 0.54 -0.1
4,545,330 + ECD_04266 0.54 -0.7
4,545,331 - ECD_04266 0.54 -0.2
4,545,332 + ECD_04266 0.54 -2.8
4,545,332 + ECD_04266 0.54 +0.1
4,545,333 - ECD_04266 0.54 -0.1
4,545,333 - ECD_04266 0.54 -1.5
4,545,333 - ECD_04266 0.54 +0.5
4,545,361 + ECD_04266 0.56 -0.1
4,545,361 + ECD_04266 0.56 -2.9
4,545,429 - ECD_04266 0.62 -1.2
4,545,468 + ECD_04266 0.65 -0.2
4,545,633 + ECD_04266 0.78 +0.3
4,545,840 + -0.6
4,546,039 + +0.2
4,546,039 + -0.4
4,546,040 - +0.1
4,546,050 + +1.0
4,546,122 + +1.2
4,546,123 - +0.2
4,546,147 - -1.0
4,546,210 + +0.8
4,546,211 - +0.7
4,546,279 + +0.7
4,546,280 - +1.3
4,546,302 - +3.3
4,546,322 + +0.7
4,546,359 - +1.1
4,546,578 - ECD_04267 0.22 -0.1
4,546,597 + ECD_04267 0.23 +1.4
4,546,634 + ECD_04267 0.25 +0.5
4,546,886 + ECD_04267 0.41 +0.1
4,547,037 - ECD_04267 0.50 +0.7
4,547,037 - ECD_04267 0.50 +0.1
4,547,037 - ECD_04267 0.50 +1.6
4,547,078 + ECD_04267 0.52 +0.0
4,547,078 + ECD_04267 0.52 -0.8
4,547,146 + ECD_04267 0.56 +0.5
4,547,147 - ECD_04267 0.56 +0.4
4,547,165 + ECD_04267 0.57 +0.5
4,547,219 - ECD_04267 0.61 -0.1
4,547,232 - ECD_04267 0.61 +2.2
4,547,425 - ECD_04267 0.73 +1.1
4,547,425 - ECD_04267 0.73 +0.9
4,547,452 - ECD_04267 0.75 +3.3
4,547,462 + ECD_04267 0.75 +1.3
4,547,463 - ECD_04267 0.75 +1.5
4,547,554 + ECD_04267 0.81 +1.4
4,547,709 - ECD_04267 0.90 +1.0
4,547,709 - ECD_04267 0.90 +1.3
4,547,724 - +0.7
4,547,739 - +1.2
4,547,858 + +0.7
4,547,858 + +1.5
4,547,858 + +0.9
4,547,859 - +0.6
4,547,859 - +0.5
4,547,931 - +0.3
4,547,931 - +2.3
4,547,976 + -1.1
4,547,976 + -0.3
4,547,977 - -0.2
4,548,006 + -0.0
4,548,029 + +0.2
4,548,029 + +0.7
4,548,029 + +0.7
4,548,030 - -0.4
4,548,030 - -0.3
4,548,030 - +0.4
4,548,036 - +0.5
4,548,063 + -1.7
4,548,063 + -0.1
4,548,063 + -0.8
4,548,063 + -0.0
4,548,063 + +0.4
4,548,064 - +1.4
4,548,064 - +0.1
4,548,067 + +0.3
4,548,073 + -0.3
4,548,345 - ECD_04268 0.13 +0.3
4,548,345 - ECD_04268 0.13 -0.1
4,548,443 - ECD_04268 0.18 +1.7
4,548,486 - ECD_04268 0.21 -0.6
4,548,486 - ECD_04268 0.21 +0.8
4,548,489 + ECD_04268 0.21 -0.2
4,548,489 + ECD_04268 0.21 +0.9
4,548,489 + ECD_04268 0.21 -1.5
4,548,489 + ECD_04268 0.21 +0.2
4,548,489 + ECD_04268 0.21 -1.5
4,548,489 + ECD_04268 0.21 +0.0
4,548,489 + ECD_04268 0.21 +0.3
4,548,490 - ECD_04268 0.21 -0.5
4,548,490 - ECD_04268 0.21 +2.0
4,548,490 - ECD_04268 0.21 +1.7
4,548,492 + ECD_04268 0.21 +0.5
4,548,592 + ECD_04268 0.26 -0.9
4,548,592 + ECD_04268 0.26 +0.0
4,548,592 + ECD_04268 0.26 +0.9
4,548,593 - ECD_04268 0.26 -1.1
4,548,596 + ECD_04268 0.26 +1.3
4,548,636 + ECD_04268 0.28 -0.2
4,548,641 - ECD_04268 0.29 +0.5
4,548,685 + ECD_04268 0.31 +0.2
4,548,761 + ECD_04268 0.35 -1.2

Or see this region's nucleotide sequence