Strain Fitness in Escherichia coli BL21 around ECD_04206

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04205 and ECD_04206 are separated by 40 nucleotidesECD_04206 and ECD_04207 are separated by 478 nucleotides ECD_04205: ECD_04205 - zinc-type alcohol dehydrogenase-like protein, at 4,475,245 to 4,476,525 _04205 ECD_04206: ECD_04206 - multidrug efflux system protein, at 4,476,566 to 4,477,798 _04206 ECD_04207: ECD_04207 - putative transposase, at 4,478,277 to 4,479,044 _04207 Position (kb) 4476 4477 4478Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4475.778 kb on + strand, within ECD_04205at 4475.782 kb on - strand, within ECD_04205at 4475.782 kb on - strand, within ECD_04205at 4475.826 kb on + strand, within ECD_04205at 4476.001 kb on - strand, within ECD_04205at 4476.001 kb on - strand, within ECD_04205at 4476.069 kb on + strand, within ECD_04205at 4476.070 kb on - strand, within ECD_04205at 4476.519 kb on + strandat 4476.526 kb on - strandat 4476.537 kb on + strandat 4476.582 kb on - strandat 4476.748 kb on + strand, within ECD_04206at 4476.749 kb on - strand, within ECD_04206at 4476.749 kb on - strand, within ECD_04206at 4476.749 kb on - strand, within ECD_04206at 4476.753 kb on - strand, within ECD_04206at 4476.799 kb on + strand, within ECD_04206at 4476.950 kb on - strand, within ECD_04206at 4477.056 kb on - strand, within ECD_04206at 4477.116 kb on + strand, within ECD_04206at 4477.116 kb on + strand, within ECD_04206at 4477.116 kb on + strand, within ECD_04206at 4477.116 kb on + strand, within ECD_04206at 4477.117 kb on - strand, within ECD_04206at 4477.117 kb on - strand, within ECD_04206at 4477.122 kb on - strand, within ECD_04206at 4477.264 kb on + strand, within ECD_04206at 4477.431 kb on + strand, within ECD_04206at 4477.456 kb on + strand, within ECD_04206at 4477.456 kb on + strand, within ECD_04206at 4477.457 kb on - strand, within ECD_04206at 4477.498 kb on + strand, within ECD_04206at 4477.535 kb on - strand, within ECD_04206at 4477.607 kb on + strand, within ECD_04206at 4477.679 kb on + strandat 4477.680 kb on - strandat 4477.680 kb on - strandat 4477.687 kb on + strandat 4477.723 kb on - strandat 4477.916 kb on - strandat 4477.979 kb on + strandat 4477.980 kb on - strandat 4477.994 kb on + strandat 4478.010 kb on - strandat 4478.010 kb on - strandat 4478.051 kb on + strandat 4478.052 kb on - strandat 4478.052 kb on - strandat 4478.052 kb on - strandat 4478.061 kb on + strandat 4478.104 kb on - strandat 4478.371 kb on + strand, within ECD_04207at 4478.410 kb on + strand, within ECD_04207at 4478.410 kb on + strand, within ECD_04207at 4478.411 kb on - strand, within ECD_04207at 4478.411 kb on - strand, within ECD_04207at 4478.502 kb on + strand, within ECD_04207at 4478.502 kb on + strand, within ECD_04207at 4478.502 kb on + strand, within ECD_04207at 4478.502 kb on + strand, within ECD_04207at 4478.502 kb on + strand, within ECD_04207at 4478.503 kb on - strand, within ECD_04207at 4478.503 kb on - strand, within ECD_04207at 4478.503 kb on - strand, within ECD_04207at 4478.503 kb on - strand, within ECD_04207at 4478.503 kb on - strand, within ECD_04207at 4478.504 kb on + strand, within ECD_04207at 4478.504 kb on + strand, within ECD_04207at 4478.504 kb on + strand, within ECD_04207at 4478.504 kb on + strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.505 kb on - strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.508 kb on + strand, within ECD_04207at 4478.509 kb on - strand, within ECD_04207at 4478.509 kb on - strand, within ECD_04207at 4478.509 kb on - strand, within ECD_04207at 4478.509 kb on - strand, within ECD_04207at 4478.509 kb on - strand, within ECD_04207at 4478.547 kb on - strand, within ECD_04207at 4478.594 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.596 kb on + strand, within ECD_04207at 4478.597 kb on - strand, within ECD_04207at 4478.597 kb on - strand, within ECD_04207at 4478.597 kb on - strand, within ECD_04207at 4478.597 kb on - strand, within ECD_04207at 4478.641 kb on + strand, within ECD_04207at 4478.646 kb on + strand, within ECD_04207at 4478.660 kb on + strand, within ECD_04207at 4478.757 kb on - strand, within ECD_04207

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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4,475,778 + ECD_04205 0.42 +0.8
4,475,782 - ECD_04205 0.42 -0.3
4,475,782 - ECD_04205 0.42 -0.6
4,475,826 + ECD_04205 0.45 -0.4
4,476,001 - ECD_04205 0.59 -0.6
4,476,001 - ECD_04205 0.59 +0.5
4,476,069 + ECD_04205 0.64 -0.9
4,476,070 - ECD_04205 0.64 -0.3
4,476,519 + +0.7
4,476,526 - -0.8
4,476,537 + +0.4
4,476,582 - -0.1
4,476,748 + ECD_04206 0.15 -0.3
4,476,749 - ECD_04206 0.15 +0.9
4,476,749 - ECD_04206 0.15 -0.5
4,476,749 - ECD_04206 0.15 -0.9
4,476,753 - ECD_04206 0.15 +0.4
4,476,799 + ECD_04206 0.19 -1.8
4,476,950 - ECD_04206 0.31 -0.7
4,477,056 - ECD_04206 0.40 -3.0
4,477,116 + ECD_04206 0.45 +0.7
4,477,116 + ECD_04206 0.45 -0.3
4,477,116 + ECD_04206 0.45 +0.7
4,477,116 + ECD_04206 0.45 -0.9
4,477,117 - ECD_04206 0.45 -3.0
4,477,117 - ECD_04206 0.45 -1.3
4,477,122 - ECD_04206 0.45 -0.3
4,477,264 + ECD_04206 0.57 -0.2
4,477,431 + ECD_04206 0.70 -0.0
4,477,456 + ECD_04206 0.72 +0.4
4,477,456 + ECD_04206 0.72 -0.9
4,477,457 - ECD_04206 0.72 +0.2
4,477,498 + ECD_04206 0.76 +0.8
4,477,535 - ECD_04206 0.79 +0.1
4,477,607 + ECD_04206 0.84 -0.3
4,477,679 + +0.9
4,477,680 - +1.3
4,477,680 - +0.2
4,477,687 + +0.7
4,477,723 - +0.7
4,477,916 - +0.4
4,477,979 + +1.1
4,477,980 - +1.3
4,477,994 + +0.3
4,478,010 - +1.0
4,478,010 - +0.1
4,478,051 + +0.8
4,478,052 - -0.1
4,478,052 - +0.5
4,478,052 - -0.0
4,478,061 + +0.0
4,478,104 - +0.5
4,478,371 + ECD_04207 0.12 -0.9
4,478,410 + ECD_04207 0.17 +0.5
4,478,410 + ECD_04207 0.17 -0.1
4,478,411 - ECD_04207 0.17 -1.5
4,478,411 - ECD_04207 0.17 +0.1
4,478,502 + ECD_04207 0.29 -0.2
4,478,502 + ECD_04207 0.29 -0.2
4,478,502 + ECD_04207 0.29 +0.2
4,478,502 + ECD_04207 0.29 +0.5
4,478,502 + ECD_04207 0.29 -0.5
4,478,503 - ECD_04207 0.29 +0.3
4,478,503 - ECD_04207 0.29 -0.5
4,478,503 - ECD_04207 0.29 +0.3
4,478,503 - ECD_04207 0.29 +0.7
4,478,503 - ECD_04207 0.29 +0.5
4,478,504 + ECD_04207 0.30 +0.7
4,478,504 + ECD_04207 0.30 +0.4
4,478,504 + ECD_04207 0.30 -0.3
4,478,504 + ECD_04207 0.30 +0.9
4,478,505 - ECD_04207 0.30 -0.2
4,478,505 - ECD_04207 0.30 +0.4
4,478,505 - ECD_04207 0.30 -0.1
4,478,505 - ECD_04207 0.30 -0.2
4,478,505 - ECD_04207 0.30 -1.1
4,478,505 - ECD_04207 0.30 -0.4
4,478,508 + ECD_04207 0.30 -0.7
4,478,508 + ECD_04207 0.30 -0.1
4,478,508 + ECD_04207 0.30 +0.4
4,478,508 + ECD_04207 0.30 +0.7
4,478,508 + ECD_04207 0.30 -0.9
4,478,508 + ECD_04207 0.30 +0.2
4,478,508 + ECD_04207 0.30 -0.7
4,478,508 + ECD_04207 0.30 +2.1
4,478,509 - ECD_04207 0.30 +0.1
4,478,509 - ECD_04207 0.30 -1.6
4,478,509 - ECD_04207 0.30 -0.2
4,478,509 - ECD_04207 0.30 -0.6
4,478,509 - ECD_04207 0.30 +0.5
4,478,547 - ECD_04207 0.35 -1.5
4,478,594 + ECD_04207 0.41 -0.8
4,478,596 + ECD_04207 0.42 +2.4
4,478,596 + ECD_04207 0.42 -1.3
4,478,596 + ECD_04207 0.42 +0.4
4,478,596 + ECD_04207 0.42 +0.7
4,478,596 + ECD_04207 0.42 -0.7
4,478,596 + ECD_04207 0.42 +0.2
4,478,597 - ECD_04207 0.42 -0.0
4,478,597 - ECD_04207 0.42 -1.6
4,478,597 - ECD_04207 0.42 -0.5
4,478,597 - ECD_04207 0.42 -1.6
4,478,641 + ECD_04207 0.47 +0.5
4,478,646 + ECD_04207 0.48 +0.5
4,478,660 + ECD_04207 0.50 -0.6
4,478,757 - ECD_04207 0.62 +0.7

Or see this region's nucleotide sequence