Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04205 and ECD_04206 are separated by 40 nucleotides ECD_04206 and ECD_04207 are separated by 478 nucleotides
ECD_04205: ECD_04205 - zinc-type alcohol dehydrogenase-like protein, at 4,475,245 to 4,476,525
_04205
ECD_04206: ECD_04206 - multidrug efflux system protein, at 4,476,566 to 4,477,798
_04206
ECD_04207: ECD_04207 - putative transposase, at 4,478,277 to 4,479,044
_04207
Position (kb)
4476
4477
4478 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4475.778 kb on + strand, within ECD_04205 at 4475.782 kb on - strand, within ECD_04205 at 4475.782 kb on - strand, within ECD_04205 at 4475.826 kb on + strand, within ECD_04205 at 4476.001 kb on - strand, within ECD_04205 at 4476.001 kb on - strand, within ECD_04205 at 4476.069 kb on + strand, within ECD_04205 at 4476.070 kb on - strand, within ECD_04205 at 4476.519 kb on + strand at 4476.526 kb on - strand at 4476.537 kb on + strand at 4476.582 kb on - strand at 4476.748 kb on + strand, within ECD_04206 at 4476.749 kb on - strand, within ECD_04206 at 4476.749 kb on - strand, within ECD_04206 at 4476.749 kb on - strand, within ECD_04206 at 4476.753 kb on - strand, within ECD_04206 at 4476.799 kb on + strand, within ECD_04206 at 4476.950 kb on - strand, within ECD_04206 at 4477.056 kb on - strand, within ECD_04206 at 4477.116 kb on + strand, within ECD_04206 at 4477.116 kb on + strand, within ECD_04206 at 4477.116 kb on + strand, within ECD_04206 at 4477.116 kb on + strand, within ECD_04206 at 4477.117 kb on - strand, within ECD_04206 at 4477.117 kb on - strand, within ECD_04206 at 4477.122 kb on - strand, within ECD_04206 at 4477.264 kb on + strand, within ECD_04206 at 4477.431 kb on + strand, within ECD_04206 at 4477.456 kb on + strand, within ECD_04206 at 4477.456 kb on + strand, within ECD_04206 at 4477.457 kb on - strand, within ECD_04206 at 4477.498 kb on + strand, within ECD_04206 at 4477.535 kb on - strand, within ECD_04206 at 4477.607 kb on + strand, within ECD_04206 at 4477.679 kb on + strand at 4477.680 kb on - strand at 4477.680 kb on - strand at 4477.687 kb on + strand at 4477.723 kb on - strand at 4477.916 kb on - strand at 4477.979 kb on + strand at 4477.980 kb on - strand at 4477.994 kb on + strand at 4478.010 kb on - strand at 4478.010 kb on - strand at 4478.051 kb on + strand at 4478.052 kb on - strand at 4478.052 kb on - strand at 4478.052 kb on - strand at 4478.061 kb on + strand at 4478.104 kb on - strand at 4478.371 kb on + strand, within ECD_04207 at 4478.410 kb on + strand, within ECD_04207 at 4478.410 kb on + strand, within ECD_04207 at 4478.411 kb on - strand, within ECD_04207 at 4478.411 kb on - strand, within ECD_04207 at 4478.502 kb on + strand, within ECD_04207 at 4478.502 kb on + strand, within ECD_04207 at 4478.502 kb on + strand, within ECD_04207 at 4478.502 kb on + strand, within ECD_04207 at 4478.502 kb on + strand, within ECD_04207 at 4478.503 kb on - strand, within ECD_04207 at 4478.503 kb on - strand, within ECD_04207 at 4478.503 kb on - strand, within ECD_04207 at 4478.503 kb on - strand, within ECD_04207 at 4478.503 kb on - strand, within ECD_04207 at 4478.504 kb on + strand, within ECD_04207 at 4478.504 kb on + strand, within ECD_04207 at 4478.504 kb on + strand, within ECD_04207 at 4478.504 kb on + strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.505 kb on - strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.508 kb on + strand, within ECD_04207 at 4478.509 kb on - strand, within ECD_04207 at 4478.509 kb on - strand, within ECD_04207 at 4478.509 kb on - strand, within ECD_04207 at 4478.509 kb on - strand, within ECD_04207 at 4478.509 kb on - strand, within ECD_04207 at 4478.547 kb on - strand, within ECD_04207 at 4478.594 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.596 kb on + strand, within ECD_04207 at 4478.597 kb on - strand, within ECD_04207 at 4478.597 kb on - strand, within ECD_04207 at 4478.597 kb on - strand, within ECD_04207 at 4478.597 kb on - strand, within ECD_04207 at 4478.641 kb on + strand, within ECD_04207 at 4478.646 kb on + strand, within ECD_04207 at 4478.660 kb on + strand, within ECD_04207 at 4478.757 kb on - strand, within ECD_04207
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 4,475,778 + ECD_04205 0.42 +0.8 4,475,782 - ECD_04205 0.42 -0.3 4,475,782 - ECD_04205 0.42 -0.6 4,475,826 + ECD_04205 0.45 -0.4 4,476,001 - ECD_04205 0.59 -0.6 4,476,001 - ECD_04205 0.59 +0.5 4,476,069 + ECD_04205 0.64 -0.9 4,476,070 - ECD_04205 0.64 -0.3 4,476,519 + +0.7 4,476,526 - -0.8 4,476,537 + +0.4 4,476,582 - -0.1 4,476,748 + ECD_04206 0.15 -0.3 4,476,749 - ECD_04206 0.15 +0.9 4,476,749 - ECD_04206 0.15 -0.5 4,476,749 - ECD_04206 0.15 -0.9 4,476,753 - ECD_04206 0.15 +0.4 4,476,799 + ECD_04206 0.19 -1.8 4,476,950 - ECD_04206 0.31 -0.7 4,477,056 - ECD_04206 0.40 -3.0 4,477,116 + ECD_04206 0.45 +0.7 4,477,116 + ECD_04206 0.45 -0.3 4,477,116 + ECD_04206 0.45 +0.7 4,477,116 + ECD_04206 0.45 -0.9 4,477,117 - ECD_04206 0.45 -3.0 4,477,117 - ECD_04206 0.45 -1.3 4,477,122 - ECD_04206 0.45 -0.3 4,477,264 + ECD_04206 0.57 -0.2 4,477,431 + ECD_04206 0.70 -0.0 4,477,456 + ECD_04206 0.72 +0.4 4,477,456 + ECD_04206 0.72 -0.9 4,477,457 - ECD_04206 0.72 +0.2 4,477,498 + ECD_04206 0.76 +0.8 4,477,535 - ECD_04206 0.79 +0.1 4,477,607 + ECD_04206 0.84 -0.3 4,477,679 + +0.9 4,477,680 - +1.3 4,477,680 - +0.2 4,477,687 + +0.7 4,477,723 - +0.7 4,477,916 - +0.4 4,477,979 + +1.1 4,477,980 - +1.3 4,477,994 + +0.3 4,478,010 - +1.0 4,478,010 - +0.1 4,478,051 + +0.8 4,478,052 - -0.1 4,478,052 - +0.5 4,478,052 - -0.0 4,478,061 + +0.0 4,478,104 - +0.5 4,478,371 + ECD_04207 0.12 -0.9 4,478,410 + ECD_04207 0.17 +0.5 4,478,410 + ECD_04207 0.17 -0.1 4,478,411 - ECD_04207 0.17 -1.5 4,478,411 - ECD_04207 0.17 +0.1 4,478,502 + ECD_04207 0.29 -0.2 4,478,502 + ECD_04207 0.29 -0.2 4,478,502 + ECD_04207 0.29 +0.2 4,478,502 + ECD_04207 0.29 +0.5 4,478,502 + ECD_04207 0.29 -0.5 4,478,503 - ECD_04207 0.29 +0.3 4,478,503 - ECD_04207 0.29 -0.5 4,478,503 - ECD_04207 0.29 +0.3 4,478,503 - ECD_04207 0.29 +0.7 4,478,503 - ECD_04207 0.29 +0.5 4,478,504 + ECD_04207 0.30 +0.7 4,478,504 + ECD_04207 0.30 +0.4 4,478,504 + ECD_04207 0.30 -0.3 4,478,504 + ECD_04207 0.30 +0.9 4,478,505 - ECD_04207 0.30 -0.2 4,478,505 - ECD_04207 0.30 +0.4 4,478,505 - ECD_04207 0.30 -0.1 4,478,505 - ECD_04207 0.30 -0.2 4,478,505 - ECD_04207 0.30 -1.1 4,478,505 - ECD_04207 0.30 -0.4 4,478,508 + ECD_04207 0.30 -0.7 4,478,508 + ECD_04207 0.30 -0.1 4,478,508 + ECD_04207 0.30 +0.4 4,478,508 + ECD_04207 0.30 +0.7 4,478,508 + ECD_04207 0.30 -0.9 4,478,508 + ECD_04207 0.30 +0.2 4,478,508 + ECD_04207 0.30 -0.7 4,478,508 + ECD_04207 0.30 +2.1 4,478,509 - ECD_04207 0.30 +0.1 4,478,509 - ECD_04207 0.30 -1.6 4,478,509 - ECD_04207 0.30 -0.2 4,478,509 - ECD_04207 0.30 -0.6 4,478,509 - ECD_04207 0.30 +0.5 4,478,547 - ECD_04207 0.35 -1.5 4,478,594 + ECD_04207 0.41 -0.8 4,478,596 + ECD_04207 0.42 +2.4 4,478,596 + ECD_04207 0.42 -1.3 4,478,596 + ECD_04207 0.42 +0.4 4,478,596 + ECD_04207 0.42 +0.7 4,478,596 + ECD_04207 0.42 -0.7 4,478,596 + ECD_04207 0.42 +0.2 4,478,597 - ECD_04207 0.42 -0.0 4,478,597 - ECD_04207 0.42 -1.6 4,478,597 - ECD_04207 0.42 -0.5 4,478,597 - ECD_04207 0.42 -1.6 4,478,641 + ECD_04207 0.47 +0.5 4,478,646 + ECD_04207 0.48 +0.5 4,478,660 + ECD_04207 0.50 -0.6 4,478,757 - ECD_04207 0.62 +0.7
Or see this region's nucleotide sequence