Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03797 and ECD_03798 overlap by 4 nucleotides ECD_03798 and ECD_03799 are separated by 149 nucleotides ECD_03799 and ECD_03800 are separated by 148 nucleotides
ECD_03797: ECD_03797 - sensory histidine kinase in two-component regulatory system with CpxR, at 4,011,524 to 4,012,897
_03797
ECD_03798: ECD_03798 - response regulator in two-component regulatory system with CpxA, at 4,012,894 to 4,013,592
_03798
ECD_03799: ECD_03799 - inhibitor of the cpx response; periplasmic adaptor protein, at 4,013,742 to 4,014,242
_03799
ECD_03800: ECD_03800 - ferrous iron and zinc transporter, at 4,014,391 to 4,015,293
_03800
Position (kb)
4012
4013
4014 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 4012.010 kb on - strand, within ECD_03797 at 4012.010 kb on - strand, within ECD_03797 at 4012.325 kb on - strand, within ECD_03797 at 4012.477 kb on - strand, within ECD_03797 at 4012.531 kb on - strand, within ECD_03797 at 4012.670 kb on - strand, within ECD_03797 at 4012.670 kb on - strand, within ECD_03797 at 4012.670 kb on - strand, within ECD_03797 at 4012.704 kb on - strand, within ECD_03797 at 4012.893 kb on - strand at 4013.050 kb on + strand, within ECD_03798 at 4013.304 kb on - strand, within ECD_03798 at 4013.368 kb on - strand, within ECD_03798 at 4013.405 kb on - strand, within ECD_03798 at 4013.543 kb on - strand at 4013.543 kb on - strand at 4013.576 kb on - strand at 4013.598 kb on - strand at 4013.638 kb on - strand at 4013.650 kb on + strand at 4013.650 kb on + strand at 4013.650 kb on + strand at 4013.650 kb on + strand at 4013.651 kb on - strand at 4013.651 kb on - strand at 4013.651 kb on - strand at 4013.651 kb on - strand at 4013.661 kb on - strand at 4013.695 kb on - strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.749 kb on + strand at 4013.750 kb on - strand at 4013.750 kb on - strand at 4013.750 kb on - strand at 4013.753 kb on + strand at 4013.794 kb on + strand, within ECD_03799 at 4013.794 kb on + strand, within ECD_03799 at 4013.849 kb on + strand, within ECD_03799 at 4013.861 kb on + strand, within ECD_03799 at 4013.861 kb on + strand, within ECD_03799 at 4013.873 kb on + strand, within ECD_03799 at 4013.874 kb on - strand, within ECD_03799 at 4013.874 kb on - strand, within ECD_03799 at 4013.874 kb on - strand, within ECD_03799 at 4013.874 kb on - strand, within ECD_03799 at 4013.887 kb on + strand, within ECD_03799 at 4013.887 kb on + strand, within ECD_03799 at 4013.887 kb on + strand, within ECD_03799 at 4013.888 kb on - strand, within ECD_03799 at 4013.927 kb on + strand, within ECD_03799 at 4013.927 kb on + strand, within ECD_03799 at 4013.928 kb on - strand, within ECD_03799 at 4013.928 kb on - strand, within ECD_03799 at 4013.928 kb on - strand, within ECD_03799 at 4013.928 kb on - strand, within ECD_03799 at 4013.960 kb on + strand, within ECD_03799 at 4014.103 kb on - strand, within ECD_03799 at 4014.103 kb on - strand, within ECD_03799 at 4014.212 kb on - strand at 4014.218 kb on + strand at 4014.218 kb on + strand at 4014.243 kb on + strand at 4014.264 kb on + strand at 4014.332 kb on - strand at 4014.359 kb on + strand at 4014.361 kb on + strand at 4014.361 kb on + strand at 4014.362 kb on - strand at 4014.362 kb on - strand at 4014.387 kb on - strand at 4014.387 kb on - strand at 4014.390 kb on + strand at 4014.390 kb on + strand at 4014.391 kb on - strand at 4014.403 kb on + strand at 4014.458 kb on + strand at 4014.459 kb on - strand at 4014.487 kb on + strand, within ECD_03800 at 4014.487 kb on + strand, within ECD_03800 at 4014.487 kb on + strand, within ECD_03800 at 4014.488 kb on - strand, within ECD_03800 at 4014.488 kb on - strand, within ECD_03800 at 4014.561 kb on - strand, within ECD_03800 at 4014.575 kb on - strand, within ECD_03800
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 4,012,010 - ECD_03797 0.35 -0.3 4,012,010 - ECD_03797 0.35 -0.1 4,012,325 - ECD_03797 0.58 +1.7 4,012,477 - ECD_03797 0.69 +2.0 4,012,531 - ECD_03797 0.73 +0.4 4,012,670 - ECD_03797 0.83 -0.4 4,012,670 - ECD_03797 0.83 +0.1 4,012,670 - ECD_03797 0.83 +0.7 4,012,704 - ECD_03797 0.86 +0.4 4,012,893 - +1.0 4,013,050 + ECD_03798 0.22 +3.6 4,013,304 - ECD_03798 0.59 +2.4 4,013,368 - ECD_03798 0.68 +3.6 4,013,405 - ECD_03798 0.73 +1.3 4,013,543 - +2.9 4,013,543 - -1.7 4,013,576 - +2.8 4,013,598 - +2.3 4,013,638 - -2.1 4,013,650 + +4.8 4,013,650 + +2.2 4,013,650 + +1.3 4,013,650 + +1.9 4,013,651 - -2.7 4,013,651 - -1.8 4,013,651 - -3.3 4,013,651 - -2.3 4,013,661 - -3.5 4,013,695 - -2.4 4,013,749 + +1.3 4,013,749 + -0.4 4,013,749 + +0.1 4,013,749 + +0.7 4,013,749 + +0.3 4,013,749 + +0.0 4,013,749 + +2.9 4,013,750 - -1.1 4,013,750 - -2.1 4,013,750 - -3.5 4,013,753 + +1.0 4,013,794 + ECD_03799 0.10 +1.0 4,013,794 + ECD_03799 0.10 +0.8 4,013,849 + ECD_03799 0.21 +0.6 4,013,861 + ECD_03799 0.24 +0.4 4,013,861 + ECD_03799 0.24 -0.7 4,013,873 + ECD_03799 0.26 +0.1 4,013,874 - ECD_03799 0.26 -4.2 4,013,874 - ECD_03799 0.26 -1.6 4,013,874 - ECD_03799 0.26 -3.3 4,013,874 - ECD_03799 0.26 -4.4 4,013,887 + ECD_03799 0.29 +0.9 4,013,887 + ECD_03799 0.29 +0.5 4,013,887 + ECD_03799 0.29 +0.7 4,013,888 - ECD_03799 0.29 -1.7 4,013,927 + ECD_03799 0.37 -0.2 4,013,927 + ECD_03799 0.37 -0.6 4,013,928 - ECD_03799 0.37 -3.3 4,013,928 - ECD_03799 0.37 -3.0 4,013,928 - ECD_03799 0.37 -1.0 4,013,928 - ECD_03799 0.37 -2.1 4,013,960 + ECD_03799 0.44 -1.0 4,014,103 - ECD_03799 0.72 +0.9 4,014,103 - ECD_03799 0.72 -5.1 4,014,212 - -2.0 4,014,218 + -0.1 4,014,218 + +0.2 4,014,243 + -2.1 4,014,264 + +0.2 4,014,332 - -1.1 4,014,359 + -0.6 4,014,361 + -0.2 4,014,361 + -0.0 4,014,362 - -2.7 4,014,362 - -3.3 4,014,387 - -0.9 4,014,387 - -2.1 4,014,390 + -0.1 4,014,390 + +0.0 4,014,391 - -2.1 4,014,403 + +0.1 4,014,458 + -0.4 4,014,459 - -1.1 4,014,487 + ECD_03800 0.11 +0.3 4,014,487 + ECD_03800 0.11 -0.5 4,014,487 + ECD_03800 0.11 -0.9 4,014,488 - ECD_03800 0.11 +0.6 4,014,488 - ECD_03800 0.11 -2.7 4,014,561 - ECD_03800 0.19 -0.7 4,014,575 - ECD_03800 0.20 +0.7
Or see this region's nucleotide sequence