Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03784 and ECD_03785 are separated by 10 nucleotides ECD_03785 and ECD_03786 are separated by 476 nucleotides
ECD_03784: ECD_03784 - putative PTS enzyme, IIB component/IIC component, at 3,997,502 to 3,998,953
_03784
ECD_03785: ECD_03785 - putative enzyme IIA component of PTS, at 3,998,964 to 3,999,410
_03785
ECD_03786: ECD_03786 - putative glycoporin, at 3,999,887 to 4,001,281
_03786
Position (kb) 3998
3999
4000 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3997.982 kb on - strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.119 kb on - strand, within ECD_03784 at 3998.119 kb on - strand, within ECD_03784 at 3998.119 kb on - strand, within ECD_03784 at 3998.121 kb on + strand, within ECD_03784 at 3998.122 kb on - strand, within ECD_03784 at 3998.150 kb on - strand, within ECD_03784 at 3998.186 kb on + strand, within ECD_03784 at 3998.187 kb on - strand, within ECD_03784 at 3998.229 kb on + strand, within ECD_03784 at 3998.230 kb on - strand, within ECD_03784 at 3998.230 kb on - strand, within ECD_03784 at 3998.348 kb on - strand, within ECD_03784 at 3998.348 kb on - strand, within ECD_03784 at 3998.368 kb on + strand, within ECD_03784 at 3998.368 kb on + strand, within ECD_03784 at 3998.369 kb on - strand, within ECD_03784 at 3998.371 kb on - strand, within ECD_03784 at 3998.371 kb on - strand, within ECD_03784 at 3998.371 kb on - strand, within ECD_03784 at 3998.392 kb on + strand, within ECD_03784 at 3998.393 kb on - strand, within ECD_03784 at 3998.427 kb on - strand, within ECD_03784 at 3998.458 kb on + strand, within ECD_03784 at 3998.458 kb on + strand, within ECD_03784 at 3998.466 kb on + strand, within ECD_03784 at 3998.841 kb on - strand at 3998.845 kb on + strand at 3998.892 kb on + strand at 3998.892 kb on + strand at 3998.892 kb on + strand at 3998.892 kb on + strand at 3998.893 kb on - strand at 3998.893 kb on - strand at 3998.893 kb on - strand at 3998.893 kb on - strand at 3998.935 kb on + strand at 3998.936 kb on - strand at 3998.939 kb on + strand at 3998.940 kb on - strand at 3998.940 kb on - strand at 3998.986 kb on - strand at 3999.184 kb on - strand, within ECD_03785 at 3999.187 kb on - strand, within ECD_03785 at 3999.399 kb on - strand at 3999.934 kb on + strand at 3999.934 kb on + strand at 4000.044 kb on + strand, within ECD_03786 at 4000.106 kb on - strand, within ECD_03786 at 4000.163 kb on - strand, within ECD_03786 at 4000.313 kb on - strand, within ECD_03786 at 4000.390 kb on + strand, within ECD_03786
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 3,997,982 - ECD_03784 0.33 +0.2 3,998,118 + ECD_03784 0.42 -0.3 3,998,118 + ECD_03784 0.42 +0.0 3,998,118 + ECD_03784 0.42 +0.9 3,998,118 + ECD_03784 0.42 -0.3 3,998,118 + ECD_03784 0.42 +0.9 3,998,118 + ECD_03784 0.42 +0.1 3,998,118 + ECD_03784 0.42 +0.2 3,998,119 - ECD_03784 0.42 +0.2 3,998,119 - ECD_03784 0.42 +0.1 3,998,119 - ECD_03784 0.42 +0.1 3,998,121 + ECD_03784 0.43 +0.6 3,998,122 - ECD_03784 0.43 +0.6 3,998,150 - ECD_03784 0.45 +3.9 3,998,186 + ECD_03784 0.47 -1.9 3,998,187 - ECD_03784 0.47 +1.8 3,998,229 + ECD_03784 0.50 +0.8 3,998,230 - ECD_03784 0.50 +0.9 3,998,230 - ECD_03784 0.50 +0.6 3,998,348 - ECD_03784 0.58 +0.6 3,998,348 - ECD_03784 0.58 -0.2 3,998,368 + ECD_03784 0.60 -0.6 3,998,368 + ECD_03784 0.60 +0.9 3,998,369 - ECD_03784 0.60 +1.5 3,998,371 - ECD_03784 0.60 -0.0 3,998,371 - ECD_03784 0.60 +0.1 3,998,371 - ECD_03784 0.60 +1.4 3,998,392 + ECD_03784 0.61 +0.6 3,998,393 - ECD_03784 0.61 +0.1 3,998,427 - ECD_03784 0.64 +0.1 3,998,458 + ECD_03784 0.66 +0.1 3,998,458 + ECD_03784 0.66 -0.1 3,998,466 + ECD_03784 0.66 -0.2 3,998,841 - -0.6 3,998,845 + +1.1 3,998,892 + -0.2 3,998,892 + +1.8 3,998,892 + -0.3 3,998,892 + +0.1 3,998,893 - +0.6 3,998,893 - -0.7 3,998,893 - -1.0 3,998,893 - +0.6 3,998,935 + -0.2 3,998,936 - +0.1 3,998,939 + -0.0 3,998,940 - +0.4 3,998,940 - -0.6 3,998,986 - -0.1 3,999,184 - ECD_03785 0.49 +0.4 3,999,187 - ECD_03785 0.50 +1.7 3,999,399 - -0.4 3,999,934 + +0.9 3,999,934 + -0.3 4,000,044 + ECD_03786 0.11 +0.5 4,000,106 - ECD_03786 0.16 +0.0 4,000,163 - ECD_03786 0.20 +0.1 4,000,313 - ECD_03786 0.31 -0.5 4,000,390 + ECD_03786 0.36 -1.6
Or see this region's nucleotide sequence