Strain Fitness in Escherichia coli BL21 around ECD_03784

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03783 and ECD_03784 overlap by 11 nucleotidesECD_03784 and ECD_03785 are separated by 10 nucleotidesECD_03785 and ECD_03786 are separated by 476 nucleotides ECD_03783: ECD_03783 - putative peptidase, at 3,996,442 to 3,997,512 _03783 ECD_03784: ECD_03784 - putative PTS enzyme, IIB component/IIC component, at 3,997,502 to 3,998,953 _03784 ECD_03785: ECD_03785 - putative enzyme IIA component of PTS, at 3,998,964 to 3,999,410 _03785 ECD_03786: ECD_03786 - putative glycoporin, at 3,999,887 to 4,001,281 _03786 Position (kb) 3997 3998 3999Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3996.533 kb on + strandat 3996.534 kb on - strandat 3996.552 kb on + strand, within ECD_03783at 3996.676 kb on + strand, within ECD_03783at 3996.684 kb on + strand, within ECD_03783at 3996.684 kb on + strand, within ECD_03783at 3996.734 kb on + strand, within ECD_03783at 3996.789 kb on + strand, within ECD_03783at 3996.855 kb on + strand, within ECD_03783at 3996.920 kb on + strand, within ECD_03783at 3996.940 kb on - strand, within ECD_03783at 3996.955 kb on + strand, within ECD_03783at 3996.955 kb on + strand, within ECD_03783at 3996.955 kb on + strand, within ECD_03783at 3996.956 kb on - strand, within ECD_03783at 3997.012 kb on - strand, within ECD_03783at 3997.220 kb on - strand, within ECD_03783at 3997.329 kb on + strand, within ECD_03783at 3997.329 kb on + strand, within ECD_03783at 3997.329 kb on + strand, within ECD_03783at 3997.329 kb on + strand, within ECD_03783at 3997.550 kb on + strandat 3997.577 kb on - strandat 3997.577 kb on - strandat 3997.577 kb on - strandat 3997.577 kb on - strandat 3997.618 kb on - strandat 3997.745 kb on - strand, within ECD_03784at 3997.773 kb on + strand, within ECD_03784at 3997.935 kb on + strand, within ECD_03784at 3997.935 kb on + strand, within ECD_03784at 3997.935 kb on + strand, within ECD_03784at 3997.936 kb on - strand, within ECD_03784at 3997.936 kb on - strand, within ECD_03784at 3997.982 kb on - strand, within ECD_03784at 3998.118 kb on + strand, within ECD_03784at 3998.118 kb on + strand, within ECD_03784at 3998.118 kb on + strand, within ECD_03784at 3998.118 kb on + strand, within ECD_03784at 3998.118 kb on + strand, within ECD_03784at 3998.118 kb on + strand, within ECD_03784at 3998.118 kb on + strand, within ECD_03784at 3998.119 kb on - strand, within ECD_03784at 3998.119 kb on - strand, within ECD_03784at 3998.119 kb on - strand, within ECD_03784at 3998.121 kb on + strand, within ECD_03784at 3998.122 kb on - strand, within ECD_03784at 3998.150 kb on - strand, within ECD_03784at 3998.186 kb on + strand, within ECD_03784at 3998.187 kb on - strand, within ECD_03784at 3998.229 kb on + strand, within ECD_03784at 3998.230 kb on - strand, within ECD_03784at 3998.230 kb on - strand, within ECD_03784at 3998.348 kb on - strand, within ECD_03784at 3998.348 kb on - strand, within ECD_03784at 3998.368 kb on + strand, within ECD_03784at 3998.368 kb on + strand, within ECD_03784at 3998.369 kb on - strand, within ECD_03784at 3998.371 kb on - strand, within ECD_03784at 3998.371 kb on - strand, within ECD_03784at 3998.371 kb on - strand, within ECD_03784at 3998.392 kb on + strand, within ECD_03784at 3998.393 kb on - strand, within ECD_03784at 3998.427 kb on - strand, within ECD_03784at 3998.458 kb on + strand, within ECD_03784at 3998.458 kb on + strand, within ECD_03784at 3998.466 kb on + strand, within ECD_03784at 3998.841 kb on - strandat 3998.845 kb on + strandat 3998.892 kb on + strandat 3998.892 kb on + strandat 3998.892 kb on + strandat 3998.892 kb on + strandat 3998.893 kb on - strandat 3998.893 kb on - strandat 3998.893 kb on - strandat 3998.893 kb on - strandat 3998.935 kb on + strandat 3998.936 kb on - strandat 3998.939 kb on + strandat 3998.940 kb on - strandat 3998.940 kb on - strandat 3998.986 kb on - strandat 3999.184 kb on - strand, within ECD_03785at 3999.187 kb on - strand, within ECD_03785at 3999.399 kb on - strandat 3999.934 kb on + strandat 3999.934 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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3,996,533 + +0.9
3,996,534 - +0.6
3,996,552 + ECD_03783 0.10 +0.3
3,996,676 + ECD_03783 0.22 -0.6
3,996,684 + ECD_03783 0.23 -0.7
3,996,684 + ECD_03783 0.23 +0.0
3,996,734 + ECD_03783 0.27 +2.3
3,996,789 + ECD_03783 0.32 +0.7
3,996,855 + ECD_03783 0.39 +0.1
3,996,920 + ECD_03783 0.45 +0.4
3,996,940 - ECD_03783 0.46 -0.5
3,996,955 + ECD_03783 0.48 +0.4
3,996,955 + ECD_03783 0.48 +0.6
3,996,955 + ECD_03783 0.48 +0.3
3,996,956 - ECD_03783 0.48 +0.7
3,997,012 - ECD_03783 0.53 -0.6
3,997,220 - ECD_03783 0.73 +0.2
3,997,329 + ECD_03783 0.83 -0.5
3,997,329 + ECD_03783 0.83 +0.1
3,997,329 + ECD_03783 0.83 -1.3
3,997,329 + ECD_03783 0.83 +0.1
3,997,550 + -0.3
3,997,577 - -0.4
3,997,577 - +0.7
3,997,577 - -0.9
3,997,577 - +0.0
3,997,618 - -1.2
3,997,745 - ECD_03784 0.17 -0.6
3,997,773 + ECD_03784 0.19 -0.2
3,997,935 + ECD_03784 0.30 +0.4
3,997,935 + ECD_03784 0.30 -0.5
3,997,935 + ECD_03784 0.30 -0.2
3,997,936 - ECD_03784 0.30 +0.1
3,997,936 - ECD_03784 0.30 +0.1
3,997,982 - ECD_03784 0.33 +0.2
3,998,118 + ECD_03784 0.42 -0.3
3,998,118 + ECD_03784 0.42 +0.0
3,998,118 + ECD_03784 0.42 +0.9
3,998,118 + ECD_03784 0.42 -0.3
3,998,118 + ECD_03784 0.42 +0.9
3,998,118 + ECD_03784 0.42 +0.1
3,998,118 + ECD_03784 0.42 +0.2
3,998,119 - ECD_03784 0.42 +0.2
3,998,119 - ECD_03784 0.42 +0.1
3,998,119 - ECD_03784 0.42 +0.1
3,998,121 + ECD_03784 0.43 +0.6
3,998,122 - ECD_03784 0.43 +0.6
3,998,150 - ECD_03784 0.45 +3.9
3,998,186 + ECD_03784 0.47 -1.9
3,998,187 - ECD_03784 0.47 +1.8
3,998,229 + ECD_03784 0.50 +0.8
3,998,230 - ECD_03784 0.50 +0.9
3,998,230 - ECD_03784 0.50 +0.6
3,998,348 - ECD_03784 0.58 +0.6
3,998,348 - ECD_03784 0.58 -0.2
3,998,368 + ECD_03784 0.60 -0.6
3,998,368 + ECD_03784 0.60 +0.9
3,998,369 - ECD_03784 0.60 +1.5
3,998,371 - ECD_03784 0.60 -0.0
3,998,371 - ECD_03784 0.60 +0.1
3,998,371 - ECD_03784 0.60 +1.4
3,998,392 + ECD_03784 0.61 +0.6
3,998,393 - ECD_03784 0.61 +0.1
3,998,427 - ECD_03784 0.64 +0.1
3,998,458 + ECD_03784 0.66 +0.1
3,998,458 + ECD_03784 0.66 -0.1
3,998,466 + ECD_03784 0.66 -0.2
3,998,841 - -0.6
3,998,845 + +1.1
3,998,892 + -0.2
3,998,892 + +1.8
3,998,892 + -0.3
3,998,892 + +0.1
3,998,893 - +0.6
3,998,893 - -0.7
3,998,893 - -1.0
3,998,893 - +0.6
3,998,935 + -0.2
3,998,936 - +0.1
3,998,939 + -0.0
3,998,940 - +0.4
3,998,940 - -0.6
3,998,986 - -0.1
3,999,184 - ECD_03785 0.49 +0.4
3,999,187 - ECD_03785 0.50 +1.7
3,999,399 - -0.4
3,999,934 + +0.9
3,999,934 + -0.3

Or see this region's nucleotide sequence