Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03689 and ECD_03690 are separated by 54 nucleotides ECD_03690 and ECD_03691 are separated by 82 nucleotides
ECD_03689: ECD_03689 - DNA-dependent ATPase I and helicase II, at 3,888,260 to 3,890,422
_03689
ECD_03690: ECD_03690 - hypothetical protein, at 3,890,477 to 3,891,379
_03690
ECD_03691: ECD_03691 - DUF2233 family protein, at 3,891,462 to 3,892,226
_03691
Position (kb)
3890
3891
3892 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3890.233 kb on + strand at 3890.268 kb on - strand at 3890.345 kb on - strand at 3890.400 kb on - strand at 3890.420 kb on + strand at 3890.420 kb on + strand at 3890.420 kb on + strand at 3890.421 kb on - strand at 3890.478 kb on + strand at 3890.478 kb on + strand at 3890.478 kb on + strand at 3890.479 kb on - strand at 3890.479 kb on - strand at 3890.479 kb on - strand at 3890.479 kb on - strand at 3890.512 kb on + strand at 3890.579 kb on + strand, within ECD_03690 at 3890.579 kb on + strand, within ECD_03690 at 3890.580 kb on - strand, within ECD_03690 at 3890.580 kb on - strand, within ECD_03690 at 3890.592 kb on + strand, within ECD_03690 at 3890.592 kb on + strand, within ECD_03690 at 3890.592 kb on + strand, within ECD_03690 at 3890.593 kb on - strand, within ECD_03690 at 3890.638 kb on - strand, within ECD_03690 at 3890.684 kb on + strand, within ECD_03690 at 3890.907 kb on + strand, within ECD_03690 at 3890.907 kb on + strand, within ECD_03690 at 3890.908 kb on - strand, within ECD_03690 at 3890.908 kb on - strand, within ECD_03690 at 3890.913 kb on + strand, within ECD_03690 at 3890.913 kb on + strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.915 kb on + strand, within ECD_03690 at 3890.915 kb on + strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.935 kb on + strand, within ECD_03690 at 3890.936 kb on - strand, within ECD_03690 at 3890.936 kb on - strand, within ECD_03690 at 3890.937 kb on + strand, within ECD_03690 at 3891.052 kb on - strand, within ECD_03690 at 3891.190 kb on - strand, within ECD_03690 at 3891.190 kb on - strand, within ECD_03690 at 3891.398 kb on - strand at 3891.455 kb on - strand at 3891.463 kb on + strand at 3891.463 kb on + strand at 3891.533 kb on + strand at 3891.534 kb on - strand at 3891.535 kb on + strand at 3891.535 kb on + strand at 3891.535 kb on + strand at 3891.535 kb on + strand at 3891.535 kb on + strand at 3891.535 kb on + strand at 3891.536 kb on - strand at 3891.536 kb on - strand at 3891.536 kb on - strand at 3891.536 kb on - strand at 3891.536 kb on - strand at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.563 kb on - strand, within ECD_03691 at 3891.599 kb on - strand, within ECD_03691 at 3891.663 kb on - strand, within ECD_03691 at 3891.714 kb on - strand, within ECD_03691 at 3891.727 kb on - strand, within ECD_03691 at 3891.832 kb on + strand, within ECD_03691 at 3891.832 kb on + strand, within ECD_03691 at 3891.833 kb on - strand, within ECD_03691 at 3891.833 kb on - strand, within ECD_03691 at 3891.833 kb on - strand, within ECD_03691 at 3891.833 kb on - strand, within ECD_03691 at 3891.917 kb on - strand, within ECD_03691 at 3891.934 kb on + strand, within ECD_03691 at 3891.934 kb on + strand, within ECD_03691 at 3891.935 kb on - strand, within ECD_03691 at 3891.946 kb on + strand, within ECD_03691 at 3891.946 kb on + strand, within ECD_03691 at 3891.946 kb on + strand, within ECD_03691 at 3891.947 kb on - strand, within ECD_03691 at 3891.947 kb on - strand, within ECD_03691 at 3891.986 kb on + strand, within ECD_03691 at 3892.012 kb on - strand, within ECD_03691 at 3892.048 kb on + strand, within ECD_03691 at 3892.049 kb on - strand, within ECD_03691 at 3892.049 kb on - strand, within ECD_03691 at 3892.082 kb on + strand, within ECD_03691 at 3892.083 kb on - strand, within ECD_03691 at 3892.083 kb on - strand, within ECD_03691 at 3892.084 kb on + strand, within ECD_03691 at 3892.084 kb on + strand, within ECD_03691 at 3892.084 kb on + strand, within ECD_03691 at 3892.085 kb on - strand, within ECD_03691 at 3892.085 kb on - strand, within ECD_03691 at 3892.152 kb on + strand at 3892.227 kb on + strand at 3892.229 kb on + strand at 3892.229 kb on + strand at 3892.229 kb on + strand at 3892.229 kb on + strand at 3892.229 kb on + strand at 3892.229 kb on + strand at 3892.230 kb on - strand at 3892.300 kb on + strand at 3892.301 kb on - strand at 3892.350 kb on + strand at 3892.350 kb on + strand at 3892.372 kb on + strand at 3892.372 kb on + strand at 3892.372 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 3,890,233 + -1.9 3,890,268 - -1.9 3,890,345 - -3.4 3,890,400 - -0.7 3,890,420 + -0.2 3,890,420 + -0.1 3,890,420 + +0.1 3,890,421 - -0.1 3,890,478 + -0.9 3,890,478 + -0.2 3,890,478 + -0.4 3,890,479 - +1.1 3,890,479 - -0.3 3,890,479 - -0.6 3,890,479 - +0.3 3,890,512 + +0.0 3,890,579 + ECD_03690 0.11 +0.5 3,890,579 + ECD_03690 0.11 +0.2 3,890,580 - ECD_03690 0.11 +0.1 3,890,580 - ECD_03690 0.11 -1.1 3,890,592 + ECD_03690 0.13 +0.0 3,890,592 + ECD_03690 0.13 +0.3 3,890,592 + ECD_03690 0.13 +0.0 3,890,593 - ECD_03690 0.13 -0.1 3,890,638 - ECD_03690 0.18 -0.6 3,890,684 + ECD_03690 0.23 +0.9 3,890,907 + ECD_03690 0.48 +0.3 3,890,907 + ECD_03690 0.48 -0.5 3,890,908 - ECD_03690 0.48 +0.2 3,890,908 - ECD_03690 0.48 -2.7 3,890,913 + ECD_03690 0.48 +1.1 3,890,913 + ECD_03690 0.48 -0.1 3,890,914 - ECD_03690 0.48 -0.1 3,890,914 - ECD_03690 0.48 -1.2 3,890,914 - ECD_03690 0.48 -0.7 3,890,914 - ECD_03690 0.48 +0.7 3,890,914 - ECD_03690 0.48 -0.1 3,890,915 + ECD_03690 0.49 +0.1 3,890,915 + ECD_03690 0.49 -0.4 3,890,916 - ECD_03690 0.49 -0.4 3,890,916 - ECD_03690 0.49 -1.1 3,890,916 - ECD_03690 0.49 -0.9 3,890,916 - ECD_03690 0.49 +0.1 3,890,916 - ECD_03690 0.49 +0.2 3,890,916 - ECD_03690 0.49 -0.7 3,890,916 - ECD_03690 0.49 -0.3 3,890,916 - ECD_03690 0.49 -0.4 3,890,916 - ECD_03690 0.49 +1.2 3,890,935 + ECD_03690 0.51 +0.6 3,890,936 - ECD_03690 0.51 -0.4 3,890,936 - ECD_03690 0.51 -2.1 3,890,937 + ECD_03690 0.51 -0.2 3,891,052 - ECD_03690 0.64 -0.4 3,891,190 - ECD_03690 0.79 -0.1 3,891,190 - ECD_03690 0.79 -0.2 3,891,398 - -0.5 3,891,455 - -0.3 3,891,463 + -0.2 3,891,463 + +0.8 3,891,533 + +0.1 3,891,534 - +0.8 3,891,535 + -0.7 3,891,535 + -0.5 3,891,535 + -0.9 3,891,535 + +0.6 3,891,535 + +0.0 3,891,535 + -1.7 3,891,536 - -0.3 3,891,536 - -0.5 3,891,536 - +0.6 3,891,536 - -0.5 3,891,536 - -1.1 3,891,539 + ECD_03691 0.10 +0.9 3,891,539 + ECD_03691 0.10 -0.1 3,891,539 + ECD_03691 0.10 +0.1 3,891,539 + ECD_03691 0.10 -0.3 3,891,539 + ECD_03691 0.10 +0.0 3,891,539 + ECD_03691 0.10 +0.8 3,891,539 + ECD_03691 0.10 +0.6 3,891,540 - ECD_03691 0.10 -0.8 3,891,540 - ECD_03691 0.10 -1.9 3,891,540 - ECD_03691 0.10 -0.9 3,891,540 - ECD_03691 0.10 +0.4 3,891,540 - ECD_03691 0.10 -0.5 3,891,540 - ECD_03691 0.10 +1.9 3,891,540 - ECD_03691 0.10 +0.5 3,891,540 - ECD_03691 0.10 +0.7 3,891,540 - ECD_03691 0.10 -1.6 3,891,540 - ECD_03691 0.10 -1.1 3,891,540 - ECD_03691 0.10 -0.1 3,891,540 - ECD_03691 0.10 +0.8 3,891,540 - ECD_03691 0.10 +0.3 3,891,563 - ECD_03691 0.13 -0.6 3,891,599 - ECD_03691 0.18 -0.6 3,891,663 - ECD_03691 0.26 -0.1 3,891,714 - ECD_03691 0.33 -0.0 3,891,727 - ECD_03691 0.35 -1.0 3,891,832 + ECD_03691 0.48 +1.0 3,891,832 + ECD_03691 0.48 -0.6 3,891,833 - ECD_03691 0.48 +0.3 3,891,833 - ECD_03691 0.48 -1.8 3,891,833 - ECD_03691 0.48 +0.5 3,891,833 - ECD_03691 0.48 -1.6 3,891,917 - ECD_03691 0.59 +0.5 3,891,934 + ECD_03691 0.62 -0.1 3,891,934 + ECD_03691 0.62 +0.7 3,891,935 - ECD_03691 0.62 +0.1 3,891,946 + ECD_03691 0.63 -1.7 3,891,946 + ECD_03691 0.63 -2.0 3,891,946 + ECD_03691 0.63 +0.3 3,891,947 - ECD_03691 0.63 -1.5 3,891,947 - ECD_03691 0.63 -0.8 3,891,986 + ECD_03691 0.68 -0.5 3,892,012 - ECD_03691 0.72 -0.8 3,892,048 + ECD_03691 0.77 -0.5 3,892,049 - ECD_03691 0.77 -0.6 3,892,049 - ECD_03691 0.77 -1.1 3,892,082 + ECD_03691 0.81 +0.5 3,892,083 - ECD_03691 0.81 -0.5 3,892,083 - ECD_03691 0.81 -0.5 3,892,084 + ECD_03691 0.81 +0.9 3,892,084 + ECD_03691 0.81 -0.1 3,892,084 + ECD_03691 0.81 -0.5 3,892,085 - ECD_03691 0.81 -1.3 3,892,085 - ECD_03691 0.81 -0.9 3,892,152 + -1.9 3,892,227 + +1.2 3,892,229 + -0.2 3,892,229 + -0.3 3,892,229 + -0.3 3,892,229 + -0.1 3,892,229 + +0.2 3,892,229 + +0.1 3,892,230 - -0.0 3,892,300 + -0.0 3,892,301 - -0.3 3,892,350 + +3.1 3,892,350 + +3.1 3,892,372 + +0.1 3,892,372 + +1.3 3,892,372 + +1.5
Or see this region's nucleotide sequence