Strain Fitness in Escherichia coli BL21 around ECD_03407

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03405 and ECD_03406 are separated by 280 nucleotidesECD_03406 and ECD_03407 are separated by 186 nucleotidesECD_03407 and ECD_03408 are separated by 79 nucleotidesECD_03408 and ECD_03409 overlap by 4 nucleotides ECD_03405: ECD_03405 - HTH_CROC1 family putative transcriptional regulator, at 3,581,632 to 3,581,922 _03405 ECD_03406: ECD_03406 - RNA chaperone and antiterminator, cold-inducible, at 3,582,203 to 3,582,415 _03406 ECD_03407: ECD_03407 - toxic polypeptide, small, at 3,582,602 to 3,582,754 _03407 ECD_03408: ECD_03408 - IS150 hypothetical protein, at 3,582,834 to 3,583,355 _03408 ECD_03409: ECD_03409 - IS150 putative transposase, at 3,583,352 to 3,584,203 _03409 Position (kb) 3582 3583Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3581.640 kb on + strandat 3581.640 kb on + strandat 3581.640 kb on + strandat 3581.640 kb on + strandat 3581.641 kb on - strandat 3581.641 kb on - strandat 3581.753 kb on + strand, within ECD_03405at 3581.754 kb on - strand, within ECD_03405at 3581.805 kb on - strand, within ECD_03405at 3581.904 kb on + strandat 3581.988 kb on + strandat 3581.989 kb on - strandat 3582.075 kb on + strandat 3582.075 kb on + strandat 3582.075 kb on + strandat 3582.075 kb on + strandat 3582.078 kb on + strandat 3582.118 kb on + strandat 3582.194 kb on + strandat 3582.194 kb on + strandat 3582.197 kb on + strandat 3582.197 kb on + strandat 3582.202 kb on + strandat 3582.202 kb on + strandat 3582.202 kb on + strandat 3582.424 kb on + strandat 3582.643 kb on - strand, within ECD_03407

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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3,581,640 + -0.9
3,581,640 + -1.9
3,581,640 + -0.7
3,581,640 + +0.9
3,581,641 - -0.6
3,581,641 - +1.0
3,581,753 + ECD_03405 0.42 -0.7
3,581,754 - ECD_03405 0.42 +0.2
3,581,805 - ECD_03405 0.59 -0.1
3,581,904 + -1.8
3,581,988 + -0.9
3,581,989 - +0.4
3,582,075 + -0.1
3,582,075 + +3.4
3,582,075 + -1.4
3,582,075 + -2.6
3,582,078 + -1.6
3,582,118 + -0.8
3,582,194 + -3.0
3,582,194 + +2.8
3,582,197 + -2.9
3,582,197 + -2.5
3,582,202 + -0.5
3,582,202 + -0.9
3,582,202 + -3.3
3,582,424 + -0.0
3,582,643 - ECD_03407 0.27 +0.8

Or see this region's nucleotide sequence