Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03327 and ECD_03328 overlap by 1 nucleotides ECD_03328 and ECD_03329 overlap by 4 nucleotides ECD_03329 and ECD_03330 are separated by 5 nucleotides ECD_03330 and ECD_03331 are separated by 202 nucleotides
ECD_03327: ECD_03327 - nickel ABC transporter permease, at 3,478,566 to 3,479,399
_03327
ECD_03328: ECD_03328 - nickel ABC transporter ATPase, at 3,479,399 to 3,480,163
_03328
ECD_03329: ECD_03329 - nickel ABC transporter ATPase, at 3,480,160 to 3,480,966
_03329
ECD_03330: ECD_03330 - transcriptional repressor, Ni-binding, at 3,480,972 to 3,481,373
_03330
ECD_03331: ECD_03331 - Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor, at 3,481,576 to 3,485,811
_03331
Position (kb)
3480
3481 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3479.172 kb on - strand, within ECD_03327 at 3479.172 kb on - strand, within ECD_03327 at 3479.265 kb on + strand, within ECD_03327 at 3479.266 kb on - strand, within ECD_03327 at 3479.266 kb on - strand, within ECD_03327 at 3479.267 kb on + strand, within ECD_03327 at 3479.267 kb on + strand, within ECD_03327 at 3479.267 kb on + strand, within ECD_03327 at 3479.268 kb on - strand, within ECD_03327 at 3479.268 kb on - strand, within ECD_03327 at 3479.333 kb on + strand at 3479.397 kb on + strand at 3479.398 kb on - strand at 3479.418 kb on + strand at 3479.419 kb on - strand at 3479.422 kb on + strand at 3479.422 kb on + strand at 3479.422 kb on + strand at 3479.423 kb on - strand at 3479.455 kb on - strand at 3479.463 kb on + strand at 3479.464 kb on - strand at 3479.764 kb on - strand, within ECD_03328 at 3479.919 kb on + strand, within ECD_03328 at 3479.998 kb on + strand, within ECD_03328 at 3480.050 kb on - strand, within ECD_03328 at 3480.072 kb on + strand, within ECD_03328 at 3480.072 kb on + strand, within ECD_03328 at 3480.073 kb on - strand, within ECD_03328 at 3480.140 kb on + strand at 3480.168 kb on - strand at 3480.168 kb on - strand at 3480.168 kb on - strand at 3480.172 kb on - strand at 3480.197 kb on - strand at 3480.341 kb on + strand, within ECD_03329 at 3480.342 kb on - strand, within ECD_03329 at 3480.342 kb on - strand, within ECD_03329 at 3480.364 kb on - strand, within ECD_03329 at 3480.364 kb on - strand, within ECD_03329 at 3480.366 kb on + strand, within ECD_03329 at 3480.366 kb on + strand, within ECD_03329 at 3480.366 kb on + strand, within ECD_03329 at 3480.367 kb on - strand, within ECD_03329 at 3480.367 kb on - strand, within ECD_03329 at 3480.367 kb on - strand, within ECD_03329 at 3480.367 kb on - strand, within ECD_03329 at 3480.412 kb on - strand, within ECD_03329 at 3480.440 kb on + strand, within ECD_03329 at 3480.518 kb on + strand, within ECD_03329 at 3480.518 kb on + strand, within ECD_03329 at 3480.615 kb on - strand, within ECD_03329 at 3480.674 kb on + strand, within ECD_03329 at 3480.675 kb on - strand, within ECD_03329 at 3480.717 kb on - strand, within ECD_03329 at 3480.749 kb on + strand, within ECD_03329 at 3480.794 kb on + strand, within ECD_03329 at 3480.794 kb on + strand, within ECD_03329 at 3480.874 kb on - strand, within ECD_03329 at 3480.874 kb on - strand, within ECD_03329 at 3480.874 kb on - strand, within ECD_03329 at 3481.044 kb on + strand, within ECD_03330 at 3481.045 kb on - strand, within ECD_03330 at 3481.046 kb on + strand, within ECD_03330 at 3481.046 kb on + strand, within ECD_03330 at 3481.046 kb on + strand, within ECD_03330 at 3481.047 kb on - strand, within ECD_03330 at 3481.074 kb on - strand, within ECD_03330 at 3481.104 kb on - strand, within ECD_03330 at 3481.144 kb on - strand, within ECD_03330 at 3481.144 kb on - strand, within ECD_03330 at 3481.149 kb on + strand, within ECD_03330 at 3481.149 kb on + strand, within ECD_03330 at 3481.150 kb on - strand, within ECD_03330 at 3481.150 kb on - strand, within ECD_03330 at 3481.171 kb on + strand, within ECD_03330 at 3481.377 kb on + strand at 3481.378 kb on - strand at 3481.418 kb on - strand at 3481.437 kb on + strand at 3481.441 kb on + strand at 3481.442 kb on - strand at 3481.475 kb on - strand at 3481.478 kb on + strand at 3481.480 kb on + strand at 3481.543 kb on - strand at 3481.543 kb on - strand at 3481.560 kb on - strand at 3481.652 kb on + strand at 3481.652 kb on + strand at 3481.887 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 3,479,172 - ECD_03327 0.73 -0.4 3,479,172 - ECD_03327 0.73 -0.3 3,479,265 + ECD_03327 0.84 +0.6 3,479,266 - ECD_03327 0.84 -0.9 3,479,266 - ECD_03327 0.84 -0.4 3,479,267 + ECD_03327 0.84 +0.4 3,479,267 + ECD_03327 0.84 +1.2 3,479,267 + ECD_03327 0.84 -1.1 3,479,268 - ECD_03327 0.84 -0.2 3,479,268 - ECD_03327 0.84 +0.4 3,479,333 + +0.2 3,479,397 + -0.6 3,479,398 - -1.9 3,479,418 + +0.4 3,479,419 - -0.8 3,479,422 + -0.3 3,479,422 + +0.3 3,479,422 + +0.4 3,479,423 - -0.1 3,479,455 - -0.9 3,479,463 + -0.4 3,479,464 - -1.3 3,479,764 - ECD_03328 0.48 -0.3 3,479,919 + ECD_03328 0.68 +0.3 3,479,998 + ECD_03328 0.78 +0.2 3,480,050 - ECD_03328 0.85 +0.3 3,480,072 + ECD_03328 0.88 +0.4 3,480,072 + ECD_03328 0.88 -0.3 3,480,073 - ECD_03328 0.88 +0.3 3,480,140 + -0.3 3,480,168 - +0.2 3,480,168 - +0.3 3,480,168 - +1.9 3,480,172 - -1.3 3,480,197 - -0.1 3,480,341 + ECD_03329 0.22 -3.2 3,480,342 - ECD_03329 0.23 +0.1 3,480,342 - ECD_03329 0.23 -1.2 3,480,364 - ECD_03329 0.25 +0.1 3,480,364 - ECD_03329 0.25 +0.5 3,480,366 + ECD_03329 0.26 +0.7 3,480,366 + ECD_03329 0.26 -0.9 3,480,366 + ECD_03329 0.26 +0.6 3,480,367 - ECD_03329 0.26 -0.4 3,480,367 - ECD_03329 0.26 +1.1 3,480,367 - ECD_03329 0.26 -0.9 3,480,367 - ECD_03329 0.26 -0.6 3,480,412 - ECD_03329 0.31 -0.1 3,480,440 + ECD_03329 0.35 -1.3 3,480,518 + ECD_03329 0.44 -1.4 3,480,518 + ECD_03329 0.44 -0.3 3,480,615 - ECD_03329 0.56 -0.2 3,480,674 + ECD_03329 0.64 +0.1 3,480,675 - ECD_03329 0.64 +0.3 3,480,717 - ECD_03329 0.69 +0.1 3,480,749 + ECD_03329 0.73 -0.5 3,480,794 + ECD_03329 0.79 -0.4 3,480,794 + ECD_03329 0.79 -0.2 3,480,874 - ECD_03329 0.88 +0.7 3,480,874 - ECD_03329 0.88 -1.0 3,480,874 - ECD_03329 0.88 -0.9 3,481,044 + ECD_03330 0.18 -0.1 3,481,045 - ECD_03330 0.18 +0.1 3,481,046 + ECD_03330 0.18 +1.0 3,481,046 + ECD_03330 0.18 +1.1 3,481,046 + ECD_03330 0.18 -0.1 3,481,047 - ECD_03330 0.19 +0.5 3,481,074 - ECD_03330 0.25 -0.6 3,481,104 - ECD_03330 0.33 -2.2 3,481,144 - ECD_03330 0.43 +2.2 3,481,144 - ECD_03330 0.43 +0.7 3,481,149 + ECD_03330 0.44 -1.3 3,481,149 + ECD_03330 0.44 +0.2 3,481,150 - ECD_03330 0.44 -0.7 3,481,150 - ECD_03330 0.44 -0.9 3,481,171 + ECD_03330 0.50 +0.7 3,481,377 + -1.7 3,481,378 - -0.7 3,481,418 - -0.9 3,481,437 + -0.7 3,481,441 + +0.4 3,481,442 - +0.2 3,481,475 - +0.5 3,481,478 + +0.8 3,481,480 + -1.2 3,481,543 - -1.0 3,481,543 - +0.5 3,481,560 - +0.1 3,481,652 + +0.5 3,481,652 + +0.7 3,481,887 - +0.8
Or see this region's nucleotide sequence