Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03105 and ECD_03106 are separated by 67 nucleotides ECD_03106 and ECD_03107 overlap by 11 nucleotides ECD_03107 and ECD_03108 are separated by 8 nucleotides
ECD_03105: ECD_03105 - DUF3971-AsmA2 domains protein, at 3,253,614 to 3,257,414
_03105
ECD_03106: ECD_03106 - ribonuclease G, at 3,257,482 to 3,258,951
_03106
ECD_03107: ECD_03107 - dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase, at 3,258,941 to 3,259,534
_03107
ECD_03108: ECD_03108 - cell wall structural complex MreBCD transmembrane component MreD, at 3,259,543 to 3,260,031
_03108
Position (kb)
3257
3258
3259 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3256.551 kb on - strand, within ECD_03105 at 3256.554 kb on - strand, within ECD_03105 at 3256.584 kb on - strand, within ECD_03105 at 3256.584 kb on - strand, within ECD_03105 at 3256.648 kb on - strand, within ECD_03105 at 3256.648 kb on - strand, within ECD_03105 at 3256.861 kb on - strand, within ECD_03105 at 3257.114 kb on + strand at 3257.115 kb on - strand at 3257.118 kb on + strand at 3257.118 kb on + strand at 3257.119 kb on - strand at 3257.119 kb on - strand at 3257.119 kb on - strand at 3257.119 kb on - strand at 3257.184 kb on + strand at 3257.283 kb on + strand at 3257.333 kb on + strand at 3257.484 kb on - strand at 3257.484 kb on - strand at 3257.484 kb on - strand at 3257.492 kb on - strand at 3257.516 kb on + strand at 3257.517 kb on - strand at 3257.517 kb on - strand at 3257.624 kb on + strand at 3257.625 kb on - strand at 3257.625 kb on - strand at 3257.649 kb on - strand, within ECD_03106 at 3257.688 kb on - strand, within ECD_03106 at 3257.688 kb on - strand, within ECD_03106 at 3257.688 kb on - strand, within ECD_03106 at 3257.692 kb on + strand, within ECD_03106 at 3257.752 kb on + strand, within ECD_03106 at 3257.752 kb on + strand, within ECD_03106 at 3257.752 kb on + strand, within ECD_03106 at 3257.752 kb on + strand, within ECD_03106 at 3257.753 kb on - strand, within ECD_03106 at 3257.753 kb on - strand, within ECD_03106 at 3257.753 kb on - strand, within ECD_03106 at 3257.753 kb on - strand, within ECD_03106 at 3257.753 kb on - strand, within ECD_03106 at 3257.753 kb on - strand, within ECD_03106 at 3257.896 kb on - strand, within ECD_03106 at 3257.937 kb on + strand, within ECD_03106 at 3258.100 kb on + strand, within ECD_03106 at 3258.227 kb on - strand, within ECD_03106 at 3258.237 kb on - strand, within ECD_03106 at 3258.237 kb on - strand, within ECD_03106 at 3258.364 kb on - strand, within ECD_03106 at 3258.519 kb on + strand, within ECD_03106 at 3258.806 kb on - strand at 3258.828 kb on - strand at 3258.828 kb on - strand at 3258.831 kb on + strand at 3258.898 kb on - strand at 3258.899 kb on + strand at 3258.926 kb on - strand at 3258.986 kb on - strand at 3258.986 kb on - strand at 3258.990 kb on - strand at 3258.992 kb on + strand at 3259.046 kb on + strand, within ECD_03107 at 3259.086 kb on + strand, within ECD_03107 at 3259.099 kb on + strand, within ECD_03107 at 3259.100 kb on - strand, within ECD_03107 at 3259.125 kb on + strand, within ECD_03107 at 3259.148 kb on + strand, within ECD_03107 at 3259.149 kb on - strand, within ECD_03107 at 3259.321 kb on + strand, within ECD_03107 at 3259.321 kb on + strand, within ECD_03107 at 3259.405 kb on - strand, within ECD_03107 at 3259.405 kb on - strand, within ECD_03107 at 3259.405 kb on - strand, within ECD_03107 at 3259.456 kb on + strand, within ECD_03107 at 3259.518 kb on - strand at 3259.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 3,256,551 - ECD_03105 0.77 -0.2 3,256,554 - ECD_03105 0.77 -0.5 3,256,584 - ECD_03105 0.78 -0.1 3,256,584 - ECD_03105 0.78 +0.4 3,256,648 - ECD_03105 0.80 +0.8 3,256,648 - ECD_03105 0.80 +0.6 3,256,861 - ECD_03105 0.85 +0.5 3,257,114 + -0.1 3,257,115 - +0.8 3,257,118 + -0.8 3,257,118 + -1.6 3,257,119 - -0.6 3,257,119 - -0.7 3,257,119 - -0.8 3,257,119 - -0.6 3,257,184 + -0.7 3,257,283 + +0.2 3,257,333 + +0.4 3,257,484 - +0.1 3,257,484 - +2.7 3,257,484 - +0.4 3,257,492 - +0.8 3,257,516 + +0.6 3,257,517 - -2.9 3,257,517 - -0.4 3,257,624 + +1.2 3,257,625 - -0.1 3,257,625 - -0.7 3,257,649 - ECD_03106 0.11 -0.0 3,257,688 - ECD_03106 0.14 +0.1 3,257,688 - ECD_03106 0.14 +0.7 3,257,688 - ECD_03106 0.14 +0.1 3,257,692 + ECD_03106 0.14 +0.9 3,257,752 + ECD_03106 0.18 +1.2 3,257,752 + ECD_03106 0.18 +1.9 3,257,752 + ECD_03106 0.18 -0.1 3,257,752 + ECD_03106 0.18 +1.0 3,257,753 - ECD_03106 0.18 +1.3 3,257,753 - ECD_03106 0.18 -0.6 3,257,753 - ECD_03106 0.18 +1.8 3,257,753 - ECD_03106 0.18 +1.0 3,257,753 - ECD_03106 0.18 +0.7 3,257,753 - ECD_03106 0.18 +1.9 3,257,896 - ECD_03106 0.28 +1.7 3,257,937 + ECD_03106 0.31 +2.6 3,258,100 + ECD_03106 0.42 +0.4 3,258,227 - ECD_03106 0.51 +2.6 3,258,237 - ECD_03106 0.51 +2.2 3,258,237 - ECD_03106 0.51 +2.1 3,258,364 - ECD_03106 0.60 -0.6 3,258,519 + ECD_03106 0.71 +0.9 3,258,806 - +0.8 3,258,828 - -0.4 3,258,828 - +2.4 3,258,831 + +0.4 3,258,898 - +1.4 3,258,899 + +2.3 3,258,926 - +1.2 3,258,986 - -2.1 3,258,986 - +0.7 3,258,990 - -0.5 3,258,992 + -0.9 3,259,046 + ECD_03107 0.18 +0.6 3,259,086 + ECD_03107 0.24 -0.4 3,259,099 + ECD_03107 0.27 -0.3 3,259,100 - ECD_03107 0.27 +0.7 3,259,125 + ECD_03107 0.31 +0.4 3,259,148 + ECD_03107 0.35 +1.4 3,259,149 - ECD_03107 0.35 +0.2 3,259,321 + ECD_03107 0.64 -0.3 3,259,321 + ECD_03107 0.64 +0.4 3,259,405 - ECD_03107 0.78 +0.0 3,259,405 - ECD_03107 0.78 -0.1 3,259,405 - ECD_03107 0.78 +1.1 3,259,456 + ECD_03107 0.87 +4.0 3,259,518 - +0.2 3,259,535 - +0.4
Or see this region's nucleotide sequence