Strain Fitness in Escherichia coli BL21 around ECD_02937

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02936 and ECD_02937 are separated by 194 nucleotidesECD_02937 and ECD_02938 are separated by 78 nucleotidesECD_02938 and ECD_t00056 are separated by 124 nucleotidesECD_t00056 and ECD_02939 are separated by 53 nucleotides ECD_02936: ECD_02936 - DNA primase, at 3,077,189 to 3,078,934 _02936 ECD_02937: ECD_02937 - RNA polymerase, sigma 70 (sigma D) factor, at 3,079,129 to 3,080,970 _02937 ECD_02938: ECD_02938 - G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase, at 3,081,049 to 3,081,555 _02938 ECD_t00056: ECD_t00056 - tRNA-Ile, at 3,081,680 to 3,081,755 _t00056 ECD_02939: ECD_02939 - putative siderophore interacting protein, at 3,081,809 to 3,082,573 _02939 Position (kb) 3079 3080 3081Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3078.937 kb on + strandat 3078.945 kb on + strandat 3078.945 kb on + strandat 3079.003 kb on + strandat 3079.003 kb on + strandat 3079.003 kb on + strandat 3079.003 kb on + strandat 3079.003 kb on + strandat 3079.005 kb on + strandat 3079.005 kb on + strandat 3079.005 kb on + strandat 3079.005 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.007 kb on + strandat 3079.011 kb on + strandat 3079.011 kb on + strandat 3079.011 kb on + strandat 3079.011 kb on + strandat 3079.021 kb on + strandat 3079.021 kb on + strandat 3079.021 kb on + strandat 3079.021 kb on + strandat 3079.025 kb on + strandat 3079.025 kb on + strandat 3080.969 kb on - strandat 3081.302 kb on - strand, within ECD_02938at 3081.431 kb on + strand, within ECD_02938at 3081.431 kb on + strand, within ECD_02938at 3081.432 kb on - strand, within ECD_02938at 3081.432 kb on - strand, within ECD_02938at 3081.432 kb on - strand, within ECD_02938at 3081.432 kb on - strand, within ECD_02938at 3081.434 kb on - strand, within ECD_02938at 3081.434 kb on - strand, within ECD_02938at 3081.556 kb on - strandat 3081.556 kb on - strandat 3081.560 kb on - strandat 3081.570 kb on - strandat 3081.758 kb on + strandat 3081.760 kb on + strandat 3081.760 kb on + strandat 3081.760 kb on + strandat 3081.760 kb on + strandat 3081.899 kb on - strand, within ECD_02939at 3081.924 kb on + strand, within ECD_02939at 3081.924 kb on + strand, within ECD_02939at 3081.925 kb on - strand, within ECD_02939

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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3,078,937 + +2.2
3,078,945 + +3.3
3,078,945 + -0.4
3,079,003 + -2.4
3,079,003 + +2.4
3,079,003 + -2.9
3,079,003 + +2.2
3,079,003 + -1.7
3,079,005 + -1.1
3,079,005 + -2.1
3,079,005 + +3.0
3,079,005 + -1.4
3,079,007 + +2.0
3,079,007 + -4.4
3,079,007 + +3.8
3,079,007 + -1.1
3,079,007 + -2.9
3,079,007 + -2.3
3,079,007 + -2.7
3,079,007 + -4.4
3,079,007 + +3.2
3,079,007 + -2.2
3,079,007 + -4.1
3,079,007 + -2.2
3,079,007 + +3.4
3,079,007 + -4.3
3,079,007 + -0.9
3,079,011 + +0.1
3,079,011 + -4.4
3,079,011 + -4.2
3,079,011 + +3.3
3,079,021 + -2.6
3,079,021 + -2.3
3,079,021 + -2.6
3,079,021 + +2.4
3,079,025 + -0.7
3,079,025 + -2.9
3,080,969 - -2.4
3,081,302 - ECD_02938 0.50 -0.3
3,081,431 + ECD_02938 0.75 -0.9
3,081,431 + ECD_02938 0.75 +1.7
3,081,432 - ECD_02938 0.76 -0.3
3,081,432 - ECD_02938 0.76 -0.8
3,081,432 - ECD_02938 0.76 -0.9
3,081,432 - ECD_02938 0.76 -0.3
3,081,434 - ECD_02938 0.76 -0.9
3,081,434 - ECD_02938 0.76 -1.5
3,081,556 - +1.1
3,081,556 - -1.3
3,081,560 - +0.1
3,081,570 - +3.0
3,081,758 + +2.5
3,081,760 + -0.9
3,081,760 + -0.3
3,081,760 + -0.5
3,081,760 + +0.6
3,081,899 - ECD_02939 0.12 +1.8
3,081,924 + ECD_02939 0.15 -1.5
3,081,924 + ECD_02939 0.15 +0.7
3,081,925 - ECD_02939 0.15 +2.4

Or see this region's nucleotide sequence