Strain Fitness in Escherichia coli BL21 around ECD_02838

Experiment: Bas52

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02837 and ECD_02838 overlap by 1 nucleotidesECD_02838 and ECD_02839 are separated by 29 nucleotides ECD_02837: ECD_02837 - putative type II secretion protein GspE, at 2,968,788 to 2,970,281 _02837 ECD_02838: ECD_02838 - putative type II secretion protein GspD, at 2,970,281 to 2,972,341 _02838 ECD_02839: ECD_02839 - putative secretion pathway protein, C-type protein, at 2,972,371 to 2,973,201 _02839 Position (kb) 2970 2971 2972 2973Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2969.313 kb on + strand, within ECD_02837at 2969.313 kb on + strand, within ECD_02837at 2969.313 kb on + strand, within ECD_02837at 2969.313 kb on + strand, within ECD_02837at 2969.314 kb on - strand, within ECD_02837at 2969.314 kb on - strand, within ECD_02837at 2969.411 kb on - strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2970.251 kb on + strandat 2970.270 kb on + strandat 2970.271 kb on - strandat 2970.381 kb on - strandat 2970.420 kb on + strandat 2970.420 kb on + strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.424 kb on + strandat 2970.427 kb on - strandat 2970.734 kb on + strand, within ECD_02838at 2970.835 kb on + strand, within ECD_02838at 2970.926 kb on - strand, within ECD_02838at 2971.055 kb on + strand, within ECD_02838at 2971.055 kb on + strand, within ECD_02838at 2971.063 kb on + strand, within ECD_02838at 2971.211 kb on - strand, within ECD_02838at 2971.339 kb on + strand, within ECD_02838at 2971.340 kb on - strand, within ECD_02838at 2971.340 kb on - strand, within ECD_02838at 2971.340 kb on - strand, within ECD_02838at 2971.443 kb on - strand, within ECD_02838at 2971.792 kb on + strand, within ECD_02838at 2971.792 kb on + strand, within ECD_02838at 2971.793 kb on - strand, within ECD_02838at 2971.793 kb on - strand, within ECD_02838at 2971.793 kb on - strand, within ECD_02838at 2971.816 kb on + strand, within ECD_02838at 2971.817 kb on - strand, within ECD_02838at 2971.888 kb on + strand, within ECD_02838at 2971.888 kb on + strand, within ECD_02838at 2971.889 kb on - strand, within ECD_02838at 2971.889 kb on - strand, within ECD_02838at 2971.889 kb on - strand, within ECD_02838at 2971.893 kb on - strand, within ECD_02838at 2971.901 kb on + strand, within ECD_02838at 2971.929 kb on + strand, within ECD_02838at 2971.930 kb on - strand, within ECD_02838at 2972.018 kb on + strand, within ECD_02838at 2972.029 kb on - strand, within ECD_02838at 2972.057 kb on + strand, within ECD_02838at 2972.057 kb on + strand, within ECD_02838at 2972.058 kb on - strand, within ECD_02838at 2972.064 kb on + strand, within ECD_02838at 2972.065 kb on - strand, within ECD_02838at 2972.068 kb on - strand, within ECD_02838at 2972.323 kb on + strandat 2972.324 kb on - strandat 2972.324 kb on - strandat 2972.324 kb on - strandat 2972.413 kb on + strandat 2972.414 kb on - strandat 2972.447 kb on - strandat 2972.447 kb on - strandat 2972.595 kb on + strand, within ECD_02839at 2972.596 kb on - strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.805 kb on - strand, within ECD_02839at 2972.879 kb on + strand, within ECD_02839at 2972.880 kb on - strand, within ECD_02839at 2972.955 kb on + strand, within ECD_02839at 2972.956 kb on - strand, within ECD_02839at 2972.996 kb on - strand, within ECD_02839at 2973.018 kb on - strand, within ECD_02839at 2973.046 kb on + strand, within ECD_02839at 2973.142 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
remove
2,969,313 + ECD_02837 0.35 +3.1
2,969,313 + ECD_02837 0.35 +2.6
2,969,313 + ECD_02837 0.35 +3.5
2,969,313 + ECD_02837 0.35 +3.2
2,969,314 - ECD_02837 0.35 +3.3
2,969,314 - ECD_02837 0.35 +3.8
2,969,411 - ECD_02837 0.42 +3.4
2,969,817 + ECD_02837 0.69 +3.1
2,969,817 + ECD_02837 0.69 +4.1
2,969,817 + ECD_02837 0.69 +2.8
2,969,817 + ECD_02837 0.69 +4.4
2,969,818 - ECD_02837 0.69 +2.7
2,969,818 - ECD_02837 0.69 +3.4
2,969,818 - ECD_02837 0.69 +3.1
2,969,818 - ECD_02837 0.69 +2.6
2,969,818 - ECD_02837 0.69 +3.0
2,970,251 + +4.2
2,970,270 + +3.2
2,970,271 - +3.0
2,970,381 - +4.3
2,970,420 + +2.5
2,970,420 + +3.3
2,970,421 - +3.2
2,970,421 - +3.8
2,970,421 - +3.1
2,970,421 - +4.2
2,970,421 - +3.8
2,970,424 + +3.0
2,970,427 - +3.3
2,970,734 + ECD_02838 0.22 +3.7
2,970,835 + ECD_02838 0.27 +3.7
2,970,926 - ECD_02838 0.31 +3.0
2,971,055 + ECD_02838 0.38 +4.8
2,971,055 + ECD_02838 0.38 +4.6
2,971,063 + ECD_02838 0.38 +3.6
2,971,211 - ECD_02838 0.45 +3.0
2,971,339 + ECD_02838 0.51 +3.7
2,971,340 - ECD_02838 0.51 +3.7
2,971,340 - ECD_02838 0.51 +3.7
2,971,340 - ECD_02838 0.51 +3.4
2,971,443 - ECD_02838 0.56 +2.4
2,971,792 + ECD_02838 0.73 +3.1
2,971,792 + ECD_02838 0.73 +3.5
2,971,793 - ECD_02838 0.73 +3.4
2,971,793 - ECD_02838 0.73 +2.6
2,971,793 - ECD_02838 0.73 +2.4
2,971,816 + ECD_02838 0.74 +2.9
2,971,817 - ECD_02838 0.75 +2.4
2,971,888 + ECD_02838 0.78 +2.4
2,971,888 + ECD_02838 0.78 +3.6
2,971,889 - ECD_02838 0.78 +3.2
2,971,889 - ECD_02838 0.78 +3.6
2,971,889 - ECD_02838 0.78 +4.0
2,971,893 - ECD_02838 0.78 +2.9
2,971,901 + ECD_02838 0.79 +3.4
2,971,929 + ECD_02838 0.80 +2.9
2,971,930 - ECD_02838 0.80 +3.3
2,972,018 + ECD_02838 0.84 +3.8
2,972,029 - ECD_02838 0.85 +3.3
2,972,057 + ECD_02838 0.86 +3.5
2,972,057 + ECD_02838 0.86 +3.4
2,972,058 - ECD_02838 0.86 +3.8
2,972,064 + ECD_02838 0.87 +3.1
2,972,065 - ECD_02838 0.87 +2.9
2,972,068 - ECD_02838 0.87 +3.4
2,972,323 + +2.3
2,972,324 - +3.5
2,972,324 - +3.5
2,972,324 - +2.8
2,972,413 + +3.8
2,972,414 - +2.2
2,972,447 - +2.3
2,972,447 - +1.8
2,972,595 + ECD_02839 0.27 +3.7
2,972,596 - ECD_02839 0.27 +1.8
2,972,618 + ECD_02839 0.30 +3.2
2,972,618 + ECD_02839 0.30 +5.0
2,972,618 + ECD_02839 0.30 +3.2
2,972,619 - ECD_02839 0.30 +0.9
2,972,619 - ECD_02839 0.30 +0.8
2,972,619 - ECD_02839 0.30 +2.0
2,972,619 - ECD_02839 0.30 +3.0
2,972,805 - ECD_02839 0.52 +3.4
2,972,879 + ECD_02839 0.61 +3.8
2,972,880 - ECD_02839 0.61 +3.2
2,972,955 + ECD_02839 0.70 +3.4
2,972,956 - ECD_02839 0.70 +3.3
2,972,996 - ECD_02839 0.75 +2.3
2,973,018 - ECD_02839 0.78 +2.7
2,973,046 + ECD_02839 0.81 +3.4
2,973,142 - +2.9

Or see this region's nucleotide sequence