Strain Fitness in Escherichia coli BL21 around ECD_02831

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02831 and ECD_02832 are separated by 38 nucleotidesECD_02832 and ECD_02833 are separated by 38 nucleotides ECD_02831: ECD_02831 - putative type II secretion protein GspK, at 2,964,582 to 2,965,517 _02831 ECD_02832: ECD_02832 - putative type II secretion protein GspJ, at 2,965,556 to 2,966,119 _02832 ECD_02833: ECD_02833 - putative type II secretion protein GspI, at 2,966,158 to 2,966,529 _02833 Position (kb) 2964 2965 2966Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 2963.845 kb on + strandat 2963.942 kb on + strandat 2963.950 kb on - strandat 2964.008 kb on - strandat 2964.008 kb on - strandat 2964.163 kb on - strandat 2964.163 kb on - strandat 2964.249 kb on + strandat 2964.250 kb on - strandat 2964.271 kb on + strandat 2964.271 kb on + strandat 2964.272 kb on - strandat 2964.272 kb on - strandat 2964.433 kb on - strandat 2964.703 kb on + strand, within ECD_02831at 2964.732 kb on + strand, within ECD_02831at 2964.746 kb on + strand, within ECD_02831at 2964.747 kb on - strand, within ECD_02831at 2964.829 kb on - strand, within ECD_02831at 2964.853 kb on - strand, within ECD_02831at 2964.901 kb on - strand, within ECD_02831at 2964.905 kb on + strand, within ECD_02831at 2965.036 kb on + strand, within ECD_02831at 2965.037 kb on - strand, within ECD_02831at 2965.060 kb on + strand, within ECD_02831at 2965.112 kb on + strand, within ECD_02831at 2965.112 kb on + strand, within ECD_02831at 2965.150 kb on + strand, within ECD_02831at 2965.194 kb on + strand, within ECD_02831at 2965.509 kb on + strandat 2965.562 kb on + strandat 2965.563 kb on - strandat 2965.690 kb on - strand, within ECD_02832at 2966.295 kb on - strand, within ECD_02833at 2966.363 kb on + strand, within ECD_02833at 2966.364 kb on - strand, within ECD_02833at 2966.364 kb on - strand, within ECD_02833

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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2,963,845 + +3.0
2,963,942 + +3.8
2,963,950 - +3.4
2,964,008 - +3.4
2,964,008 - +3.7
2,964,163 - +3.3
2,964,163 - +3.3
2,964,249 + +4.7
2,964,250 - +3.5
2,964,271 + +4.3
2,964,271 + +3.7
2,964,272 - +3.3
2,964,272 - +3.7
2,964,433 - +3.8
2,964,703 + ECD_02831 0.13 +2.2
2,964,732 + ECD_02831 0.16 +3.4
2,964,746 + ECD_02831 0.18 +3.3
2,964,747 - ECD_02831 0.18 +4.0
2,964,829 - ECD_02831 0.26 +3.4
2,964,853 - ECD_02831 0.29 +4.3
2,964,901 - ECD_02831 0.34 +4.4
2,964,905 + ECD_02831 0.35 +3.8
2,965,036 + ECD_02831 0.49 +3.5
2,965,037 - ECD_02831 0.49 +3.4
2,965,060 + ECD_02831 0.51 +3.5
2,965,112 + ECD_02831 0.57 +3.1
2,965,112 + ECD_02831 0.57 +2.8
2,965,150 + ECD_02831 0.61 +2.5
2,965,194 + ECD_02831 0.65 +6.3
2,965,509 + +3.6
2,965,562 + -0.2
2,965,563 - +2.0
2,965,690 - ECD_02832 0.24 +2.3
2,966,295 - ECD_02833 0.37 +2.7
2,966,363 + ECD_02833 0.55 +3.4
2,966,364 - ECD_02833 0.55 +2.9
2,966,364 - ECD_02833 0.55 +4.0

Or see this region's nucleotide sequence