Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02794 and ECD_02795 are separated by 48 nucleotides ECD_02795 and ECD_02796 are separated by 392 nucleotides
ECD_02794: ECD_02794 - nucleoside transporter, at 2,936,482 to 2,937,738
_02794
ECD_02795: ECD_02795 - ornithine decarboxylase, constitutive, at 2,937,787 to 2,939,922
_02795
ECD_02796: ECD_02796 - DUF554 family putative inner membrane protein, at 2,940,315 to 2,941,022
_02796
Position (kb)
2937
2938
2939
2940 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.816 kb on + strand, within ECD_02794 at 2936.833 kb on + strand, within ECD_02794 at 2936.968 kb on + strand, within ECD_02794 at 2936.968 kb on + strand, within ECD_02794 at 2936.969 kb on - strand, within ECD_02794 at 2936.970 kb on + strand, within ECD_02794 at 2936.971 kb on - strand, within ECD_02794 at 2937.109 kb on - strand, within ECD_02794 at 2937.109 kb on - strand, within ECD_02794 at 2937.178 kb on - strand, within ECD_02794 at 2937.321 kb on + strand, within ECD_02794 at 2937.321 kb on + strand, within ECD_02794 at 2937.321 kb on + strand, within ECD_02794 at 2937.322 kb on - strand, within ECD_02794 at 2937.322 kb on - strand, within ECD_02794 at 2937.330 kb on - strand, within ECD_02794 at 2937.330 kb on - strand, within ECD_02794 at 2937.330 kb on - strand, within ECD_02794 at 2937.342 kb on + strand, within ECD_02794 at 2937.407 kb on + strand, within ECD_02794 at 2937.434 kb on - strand, within ECD_02794 at 2937.595 kb on + strand, within ECD_02794 at 2937.595 kb on + strand, within ECD_02794 at 2937.596 kb on - strand, within ECD_02794 at 2937.596 kb on - strand, within ECD_02794 at 2937.629 kb on + strand at 2937.630 kb on - strand at 2937.649 kb on + strand at 2937.650 kb on - strand at 2937.692 kb on - strand at 2937.692 kb on - strand at 2937.693 kb on + strand at 2937.694 kb on - strand at 2937.694 kb on - strand at 2937.694 kb on - strand at 2937.694 kb on - strand at 2937.736 kb on + strand at 2937.737 kb on - strand at 2937.737 kb on - strand at 2937.737 kb on - strand at 2937.740 kb on + strand at 2937.740 kb on + strand at 2937.741 kb on - strand at 2937.741 kb on - strand at 2937.789 kb on - strand at 2937.789 kb on - strand at 2937.800 kb on + strand at 2937.801 kb on - strand at 2937.801 kb on - strand at 2937.801 kb on - strand at 2937.806 kb on + strand at 2937.806 kb on + strand at 2937.843 kb on - strand at 2937.843 kb on - strand at 2937.909 kb on - strand at 2938.044 kb on - strand, within ECD_02795 at 2938.115 kb on - strand, within ECD_02795 at 2938.139 kb on + strand, within ECD_02795 at 2938.140 kb on - strand, within ECD_02795 at 2938.140 kb on - strand, within ECD_02795 at 2938.140 kb on - strand, within ECD_02795 at 2938.140 kb on - strand, within ECD_02795 at 2938.140 kb on - strand, within ECD_02795 at 2938.199 kb on + strand, within ECD_02795 at 2938.200 kb on - strand, within ECD_02795 at 2938.200 kb on - strand, within ECD_02795 at 2938.200 kb on - strand, within ECD_02795 at 2938.206 kb on + strand, within ECD_02795 at 2938.207 kb on - strand, within ECD_02795 at 2938.208 kb on + strand, within ECD_02795 at 2938.251 kb on + strand, within ECD_02795 at 2938.251 kb on + strand, within ECD_02795 at 2938.318 kb on + strand, within ECD_02795 at 2938.319 kb on - strand, within ECD_02795 at 2938.380 kb on - strand, within ECD_02795 at 2938.417 kb on - strand, within ECD_02795 at 2938.440 kb on + strand, within ECD_02795 at 2938.440 kb on + strand, within ECD_02795 at 2938.441 kb on - strand, within ECD_02795 at 2938.482 kb on - strand, within ECD_02795 at 2938.497 kb on - strand, within ECD_02795 at 2938.574 kb on + strand, within ECD_02795 at 2938.629 kb on + strand, within ECD_02795 at 2938.630 kb on - strand, within ECD_02795 at 2938.765 kb on - strand, within ECD_02795 at 2938.789 kb on - strand, within ECD_02795 at 2938.793 kb on - strand, within ECD_02795 at 2938.837 kb on - strand, within ECD_02795 at 2939.009 kb on + strand, within ECD_02795 at 2939.009 kb on + strand, within ECD_02795 at 2939.009 kb on + strand, within ECD_02795 at 2939.009 kb on + strand, within ECD_02795 at 2939.009 kb on + strand, within ECD_02795 at 2939.010 kb on - strand, within ECD_02795 at 2939.010 kb on - strand, within ECD_02795 at 2939.054 kb on + strand, within ECD_02795 at 2939.054 kb on + strand, within ECD_02795 at 2939.055 kb on - strand, within ECD_02795 at 2939.055 kb on - strand, within ECD_02795 at 2939.069 kb on + strand, within ECD_02795 at 2939.070 kb on - strand, within ECD_02795 at 2939.166 kb on + strand, within ECD_02795 at 2939.166 kb on + strand, within ECD_02795 at 2939.274 kb on + strand, within ECD_02795 at 2939.274 kb on + strand, within ECD_02795 at 2939.274 kb on + strand, within ECD_02795 at 2939.274 kb on + strand, within ECD_02795 at 2939.275 kb on - strand, within ECD_02795 at 2939.363 kb on - strand, within ECD_02795 at 2939.370 kb on - strand, within ECD_02795 at 2939.370 kb on - strand, within ECD_02795 at 2939.370 kb on - strand, within ECD_02795 at 2939.370 kb on - strand, within ECD_02795 at 2939.370 kb on - strand, within ECD_02795 at 2939.466 kb on + strand, within ECD_02795 at 2939.467 kb on - strand, within ECD_02795 at 2939.472 kb on + strand, within ECD_02795 at 2939.473 kb on - strand, within ECD_02795 at 2939.473 kb on - strand, within ECD_02795 at 2939.536 kb on - strand, within ECD_02795 at 2939.594 kb on + strand, within ECD_02795 at 2939.714 kb on - strand at 2939.714 kb on - strand at 2939.770 kb on - strand at 2939.842 kb on - strand at 2939.842 kb on - strand at 2939.872 kb on - strand at 2939.908 kb on - strand at 2939.908 kb on - strand at 2939.948 kb on + strand at 2939.948 kb on + strand at 2939.948 kb on + strand at 2939.949 kb on - strand at 2939.949 kb on - strand at 2939.949 kb on - strand at 2939.949 kb on - strand at 2939.949 kb on - strand at 2939.988 kb on + strand at 2939.988 kb on + strand at 2940.031 kb on - strand at 2940.031 kb on - strand at 2940.053 kb on + strand at 2940.145 kb on + strand at 2940.145 kb on + strand at 2940.145 kb on + strand at 2940.146 kb on - strand at 2940.146 kb on - strand at 2940.146 kb on - strand at 2940.146 kb on - strand at 2940.176 kb on + strand at 2940.279 kb on + strand at 2940.295 kb on + strand at 2940.332 kb on + strand at 2940.333 kb on - strand at 2940.349 kb on + strand at 2940.349 kb on + strand at 2940.350 kb on - strand at 2940.402 kb on - strand, within ECD_02796 at 2940.458 kb on - strand, within ECD_02796 at 2940.497 kb on - strand, within ECD_02796 at 2940.596 kb on + strand, within ECD_02796 at 2940.596 kb on + strand, within ECD_02796 at 2940.596 kb on + strand, within ECD_02796 at 2940.597 kb on - strand, within ECD_02796 at 2940.597 kb on - strand, within ECD_02796 at 2940.597 kb on - strand, within ECD_02796 at 2940.620 kb on + strand, within ECD_02796 at 2940.630 kb on + strand, within ECD_02796 at 2940.630 kb on + strand, within ECD_02796 at 2940.630 kb on + strand, within ECD_02796 at 2940.631 kb on - strand, within ECD_02796 at 2940.641 kb on + strand, within ECD_02796 at 2940.642 kb on - strand, within ECD_02796 at 2940.714 kb on - strand, within ECD_02796 at 2940.805 kb on + strand, within ECD_02796 at 2940.847 kb on + strand, within ECD_02796 at 2940.850 kb on + strand, within ECD_02796 at 2940.922 kb on + strand, within ECD_02796
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 2,936,797 + ECD_02794 0.25 -0.4 2,936,797 + ECD_02794 0.25 -0.4 2,936,797 + ECD_02794 0.25 -1.3 2,936,797 + ECD_02794 0.25 -0.4 2,936,797 + ECD_02794 0.25 -1.1 2,936,797 + ECD_02794 0.25 -2.3 2,936,798 - ECD_02794 0.25 +3.1 2,936,798 - ECD_02794 0.25 +2.0 2,936,798 - ECD_02794 0.25 -0.4 2,936,798 - ECD_02794 0.25 -0.9 2,936,799 + ECD_02794 0.25 +1.4 2,936,799 + ECD_02794 0.25 -1.0 2,936,799 + ECD_02794 0.25 -0.2 2,936,799 + ECD_02794 0.25 -0.8 2,936,800 - ECD_02794 0.25 -0.9 2,936,800 - ECD_02794 0.25 -0.4 2,936,800 - ECD_02794 0.25 +3.0 2,936,800 - ECD_02794 0.25 -1.2 2,936,816 + ECD_02794 0.27 -0.8 2,936,833 + ECD_02794 0.28 +1.2 2,936,968 + ECD_02794 0.39 -0.2 2,936,968 + ECD_02794 0.39 +2.5 2,936,969 - ECD_02794 0.39 -0.8 2,936,970 + ECD_02794 0.39 -0.5 2,936,971 - ECD_02794 0.39 -2.1 2,937,109 - ECD_02794 0.50 +2.1 2,937,109 - ECD_02794 0.50 +3.4 2,937,178 - ECD_02794 0.55 +3.9 2,937,321 + ECD_02794 0.67 +3.9 2,937,321 + ECD_02794 0.67 -0.5 2,937,321 + ECD_02794 0.67 -2.0 2,937,322 - ECD_02794 0.67 +3.4 2,937,322 - ECD_02794 0.67 -0.9 2,937,330 - ECD_02794 0.67 +3.0 2,937,330 - ECD_02794 0.67 -0.7 2,937,330 - ECD_02794 0.67 -1.3 2,937,342 + ECD_02794 0.68 +1.1 2,937,407 + ECD_02794 0.74 -0.5 2,937,434 - ECD_02794 0.76 -0.8 2,937,595 + ECD_02794 0.89 -0.3 2,937,595 + ECD_02794 0.89 -1.3 2,937,596 - ECD_02794 0.89 +2.9 2,937,596 - ECD_02794 0.89 +1.5 2,937,629 + -1.9 2,937,630 - +3.6 2,937,649 + -0.2 2,937,650 - +2.8 2,937,692 - -0.2 2,937,692 - +2.6 2,937,693 + -0.7 2,937,694 - +2.0 2,937,694 - +2.5 2,937,694 - +4.4 2,937,694 - +2.4 2,937,736 + -0.6 2,937,737 - +3.5 2,937,737 - +0.1 2,937,737 - -0.6 2,937,740 + -0.1 2,937,740 + -0.8 2,937,741 - +3.3 2,937,741 - -0.2 2,937,789 - -0.9 2,937,789 - -0.7 2,937,800 + -0.4 2,937,801 - +3.8 2,937,801 - -1.4 2,937,801 - -2.3 2,937,806 + -0.8 2,937,806 + +0.4 2,937,843 - -0.8 2,937,843 - -1.1 2,937,909 - -0.1 2,938,044 - ECD_02795 0.12 -0.7 2,938,115 - ECD_02795 0.15 +0.1 2,938,139 + ECD_02795 0.16 -0.9 2,938,140 - ECD_02795 0.17 +1.1 2,938,140 - ECD_02795 0.17 +3.7 2,938,140 - ECD_02795 0.17 +0.6 2,938,140 - ECD_02795 0.17 +1.5 2,938,140 - ECD_02795 0.17 +1.6 2,938,199 + ECD_02795 0.19 -1.0 2,938,200 - ECD_02795 0.19 +1.4 2,938,200 - ECD_02795 0.19 +3.9 2,938,200 - ECD_02795 0.19 +2.7 2,938,206 + ECD_02795 0.20 +3.2 2,938,207 - ECD_02795 0.20 +3.9 2,938,208 + ECD_02795 0.20 +0.2 2,938,251 + ECD_02795 0.22 -0.5 2,938,251 + ECD_02795 0.22 +0.1 2,938,318 + ECD_02795 0.25 -1.0 2,938,319 - ECD_02795 0.25 -1.2 2,938,380 - ECD_02795 0.28 +2.5 2,938,417 - ECD_02795 0.29 +1.8 2,938,440 + ECD_02795 0.31 -0.3 2,938,440 + ECD_02795 0.31 +3.0 2,938,441 - ECD_02795 0.31 +0.2 2,938,482 - ECD_02795 0.33 +2.9 2,938,497 - ECD_02795 0.33 -0.7 2,938,574 + ECD_02795 0.37 +1.7 2,938,629 + ECD_02795 0.39 -0.7 2,938,630 - ECD_02795 0.39 -0.8 2,938,765 - ECD_02795 0.46 +2.6 2,938,789 - ECD_02795 0.47 -0.5 2,938,793 - ECD_02795 0.47 +0.0 2,938,837 - ECD_02795 0.49 -1.0 2,939,009 + ECD_02795 0.57 +2.4 2,939,009 + ECD_02795 0.57 +3.4 2,939,009 + ECD_02795 0.57 -0.7 2,939,009 + ECD_02795 0.57 +3.4 2,939,009 + ECD_02795 0.57 +0.1 2,939,010 - ECD_02795 0.57 -0.2 2,939,010 - ECD_02795 0.57 -0.4 2,939,054 + ECD_02795 0.59 -1.4 2,939,054 + ECD_02795 0.59 +2.6 2,939,055 - ECD_02795 0.59 +1.8 2,939,055 - ECD_02795 0.59 -0.2 2,939,069 + ECD_02795 0.60 +0.2 2,939,070 - ECD_02795 0.60 -1.3 2,939,166 + ECD_02795 0.65 -1.1 2,939,166 + ECD_02795 0.65 +2.1 2,939,274 + ECD_02795 0.70 +0.0 2,939,274 + ECD_02795 0.70 -0.5 2,939,274 + ECD_02795 0.70 -0.3 2,939,274 + ECD_02795 0.70 +0.8 2,939,275 - ECD_02795 0.70 +3.0 2,939,363 - ECD_02795 0.74 -1.3 2,939,370 - ECD_02795 0.74 +1.0 2,939,370 - ECD_02795 0.74 -0.4 2,939,370 - ECD_02795 0.74 -0.5 2,939,370 - ECD_02795 0.74 +4.0 2,939,370 - ECD_02795 0.74 -1.1 2,939,466 + ECD_02795 0.79 +2.7 2,939,467 - ECD_02795 0.79 +2.2 2,939,472 + ECD_02795 0.79 -0.8 2,939,473 - ECD_02795 0.79 +3.3 2,939,473 - ECD_02795 0.79 -0.2 2,939,536 - ECD_02795 0.82 -1.2 2,939,594 + ECD_02795 0.85 -1.7 2,939,714 - +0.2 2,939,714 - -0.0 2,939,770 - +1.9 2,939,842 - +0.1 2,939,842 - +2.0 2,939,872 - -1.4 2,939,908 - +3.1 2,939,908 - -0.4 2,939,948 + -0.6 2,939,948 + +3.4 2,939,948 + +3.3 2,939,949 - -0.7 2,939,949 - -0.1 2,939,949 - +1.6 2,939,949 - +0.2 2,939,949 - -1.0 2,939,988 + -0.3 2,939,988 + -0.8 2,940,031 - +3.5 2,940,031 - +0.4 2,940,053 + +3.3 2,940,145 + +3.0 2,940,145 + -0.5 2,940,145 + -0.8 2,940,146 - -0.7 2,940,146 - +0.4 2,940,146 - +1.6 2,940,146 - -0.7 2,940,176 + +1.5 2,940,279 + -0.7 2,940,295 + +2.5 2,940,332 + -0.5 2,940,333 - +0.2 2,940,349 + -0.5 2,940,349 + -1.7 2,940,350 - +0.8 2,940,402 - ECD_02796 0.12 +0.8 2,940,458 - ECD_02796 0.20 +3.4 2,940,497 - ECD_02796 0.26 -0.4 2,940,596 + ECD_02796 0.40 -0.3 2,940,596 + ECD_02796 0.40 -1.1 2,940,596 + ECD_02796 0.40 -0.3 2,940,597 - ECD_02796 0.40 -1.3 2,940,597 - ECD_02796 0.40 -1.5 2,940,597 - ECD_02796 0.40 +3.3 2,940,620 + ECD_02796 0.43 -0.5 2,940,630 + ECD_02796 0.44 -0.6 2,940,630 + ECD_02796 0.44 +3.5 2,940,630 + ECD_02796 0.44 -1.0 2,940,631 - ECD_02796 0.45 -0.4 2,940,641 + ECD_02796 0.46 +3.4 2,940,642 - ECD_02796 0.46 +2.9 2,940,714 - ECD_02796 0.56 -1.4 2,940,805 + ECD_02796 0.69 +0.6 2,940,847 + ECD_02796 0.75 +1.4 2,940,850 + ECD_02796 0.76 -0.6 2,940,922 + ECD_02796 0.86 +0.1
Or see this region's nucleotide sequence