Strain Fitness in Escherichia coli BL21 around ECD_02179

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02177 and ECD_02178 are separated by 38 nucleotidesECD_02178 and ECD_02179 are separated by 289 nucleotidesECD_02179 and ECD_02180 are separated by 3 nucleotidesECD_02180 and ECD_02181 overlap by 1 nucleotides ECD_02177: ECD_02177 - nucleoside triphosphatase, at 2,254,728 to 2,255,153 _02177 ECD_02178: ECD_02178 - putative LPS core heptose(II)-phosphate phosphatase, at 2,255,192 to 2,255,794 _02178 ECD_02179: ECD_02179 - uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent, at 2,256,084 to 2,257,241 _02179 ECD_02180: ECD_02180 - undecaprenyl phosphate-L-Ara4FN transferase, at 2,257,245 to 2,258,213 _02180 ECD_02181: ECD_02181 - fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase, at 2,258,213 to 2,260,195 _02181 Position (kb) 2256 2257 2258Strain fitness (log2 ratio) -1 0 1 2 3at 2255.273 kb on - strand, within ECD_02178at 2255.303 kb on - strand, within ECD_02178at 2255.303 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.305 kb on - strand, within ECD_02178at 2255.513 kb on - strand, within ECD_02178at 2255.561 kb on - strand, within ECD_02178at 2255.561 kb on - strand, within ECD_02178at 2255.666 kb on - strand, within ECD_02178at 2255.693 kb on - strand, within ECD_02178at 2255.755 kb on - strandat 2255.808 kb on - strandat 2255.881 kb on - strandat 2256.039 kb on + strandat 2256.064 kb on + strandat 2256.066 kb on + strandat 2256.066 kb on + strandat 2256.078 kb on + strandat 2256.161 kb on + strandat 2256.287 kb on + strand, within ECD_02179at 2256.365 kb on + strand, within ECD_02179at 2256.455 kb on + strand, within ECD_02179at 2256.489 kb on + strand, within ECD_02179at 2256.489 kb on + strand, within ECD_02179at 2256.489 kb on + strand, within ECD_02179at 2256.509 kb on + strand, within ECD_02179at 2256.581 kb on + strand, within ECD_02179at 2256.585 kb on + strand, within ECD_02179at 2256.585 kb on + strand, within ECD_02179at 2256.588 kb on + strand, within ECD_02179at 2256.602 kb on + strand, within ECD_02179at 2256.644 kb on + strand, within ECD_02179at 2256.650 kb on + strand, within ECD_02179at 2256.803 kb on + strand, within ECD_02179at 2256.803 kb on + strand, within ECD_02179at 2256.803 kb on + strand, within ECD_02179at 2256.807 kb on + strand, within ECD_02179at 2256.937 kb on + strand, within ECD_02179at 2257.066 kb on + strand, within ECD_02179at 2257.239 kb on + strandat 2257.412 kb on + strand, within ECD_02180at 2257.448 kb on + strand, within ECD_02180at 2257.528 kb on + strand, within ECD_02180at 2257.532 kb on + strand, within ECD_02180at 2257.624 kb on + strand, within ECD_02180at 2257.655 kb on + strand, within ECD_02180at 2257.727 kb on + strand, within ECD_02180at 2257.843 kb on + strand, within ECD_02180at 2257.878 kb on + strand, within ECD_02180at 2257.928 kb on + strand, within ECD_02180at 2257.946 kb on + strand, within ECD_02180at 2257.946 kb on + strand, within ECD_02180at 2257.970 kb on + strand, within ECD_02180at 2257.970 kb on + strand, within ECD_02180at 2257.988 kb on + strand, within ECD_02180at 2258.057 kb on + strand, within ECD_02180at 2258.078 kb on + strand, within ECD_02180at 2258.084 kb on + strand, within ECD_02180at 2258.113 kb on + strand, within ECD_02180at 2258.124 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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2,255,273 - ECD_02178 0.13 -1.3
2,255,303 - ECD_02178 0.18 +0.7
2,255,303 - ECD_02178 0.18 +0.1
2,255,305 - ECD_02178 0.19 +0.4
2,255,305 - ECD_02178 0.19 -0.0
2,255,305 - ECD_02178 0.19 -1.3
2,255,305 - ECD_02178 0.19 +0.3
2,255,305 - ECD_02178 0.19 +0.8
2,255,513 - ECD_02178 0.53 +0.9
2,255,561 - ECD_02178 0.61 +3.1
2,255,561 - ECD_02178 0.61 -0.0
2,255,666 - ECD_02178 0.79 +0.1
2,255,693 - ECD_02178 0.83 +0.4
2,255,755 - -0.6
2,255,808 - +0.3
2,255,881 - +0.6
2,256,039 + +0.4
2,256,064 + -0.9
2,256,066 + -0.2
2,256,066 + +0.1
2,256,078 + -1.4
2,256,161 + -0.5
2,256,287 + ECD_02179 0.18 -0.2
2,256,365 + ECD_02179 0.24 -0.9
2,256,455 + ECD_02179 0.32 -1.5
2,256,489 + ECD_02179 0.35 -1.0
2,256,489 + ECD_02179 0.35 +0.2
2,256,489 + ECD_02179 0.35 -0.4
2,256,509 + ECD_02179 0.37 -1.4
2,256,581 + ECD_02179 0.43 -0.3
2,256,585 + ECD_02179 0.43 -0.5
2,256,585 + ECD_02179 0.43 +1.5
2,256,588 + ECD_02179 0.44 -0.7
2,256,602 + ECD_02179 0.45 +0.1
2,256,644 + ECD_02179 0.48 -0.4
2,256,650 + ECD_02179 0.49 -0.8
2,256,803 + ECD_02179 0.62 -0.3
2,256,803 + ECD_02179 0.62 +0.3
2,256,803 + ECD_02179 0.62 -1.7
2,256,807 + ECD_02179 0.62 -0.7
2,256,937 + ECD_02179 0.74 +0.4
2,257,066 + ECD_02179 0.85 -0.5
2,257,239 + +0.6
2,257,412 + ECD_02180 0.17 -0.1
2,257,448 + ECD_02180 0.21 +0.1
2,257,528 + ECD_02180 0.29 -0.1
2,257,532 + ECD_02180 0.30 -0.1
2,257,624 + ECD_02180 0.39 -0.3
2,257,655 + ECD_02180 0.42 +0.4
2,257,727 + ECD_02180 0.50 -0.7
2,257,843 + ECD_02180 0.62 +0.3
2,257,878 + ECD_02180 0.65 -0.4
2,257,928 + ECD_02180 0.70 -0.6
2,257,946 + ECD_02180 0.72 +0.1
2,257,946 + ECD_02180 0.72 -0.0
2,257,970 + ECD_02180 0.75 -1.3
2,257,970 + ECD_02180 0.75 -1.3
2,257,988 + ECD_02180 0.77 +0.5
2,258,057 + ECD_02180 0.84 -0.2
2,258,078 + ECD_02180 0.86 -0.3
2,258,084 + ECD_02180 0.87 -0.1
2,258,113 + ECD_02180 0.90 -1.3
2,258,124 + -0.4

Or see this region's nucleotide sequence