Strain Fitness in Escherichia coli BL21 around ECD_02147

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02146 and ECD_02147 overlap by 4 nucleotidesECD_02147 and ECD_02148 are separated by 195 nucleotidesECD_02148 and ECD_02149 overlap by 1 nucleotides ECD_02146: ECD_02146 - sensory histidine kinase in two-component regulatory system with AtoC, at 2,210,404 to 2,212,230 _02146 ECD_02147: ECD_02147 - fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein, at 2,212,227 to 2,213,612 _02147 ECD_02148: ECD_02148 - acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit, at 2,213,808 to 2,214,470 _02148 ECD_02149: ECD_02149 - acetyl-CoA:acetoacetyl-CoA transferase, beta subunit, at 2,214,470 to 2,215,120 _02149 Position (kb) 2212 2213 2214Strain fitness (log2 ratio) -1 0 1 2 3at 2211.255 kb on - strand, within ECD_02146at 2211.255 kb on - strand, within ECD_02146at 2211.255 kb on - strand, within ECD_02146at 2211.342 kb on + strand, within ECD_02146at 2211.602 kb on + strand, within ECD_02146at 2211.607 kb on - strand, within ECD_02146at 2211.669 kb on - strand, within ECD_02146at 2211.669 kb on - strand, within ECD_02146at 2211.852 kb on - strand, within ECD_02146at 2211.914 kb on + strand, within ECD_02146at 2211.985 kb on + strand, within ECD_02146at 2212.227 kb on - strandat 2212.236 kb on - strandat 2212.348 kb on + strandat 2212.479 kb on + strand, within ECD_02147at 2212.480 kb on - strand, within ECD_02147at 2212.531 kb on - strand, within ECD_02147at 2212.536 kb on - strand, within ECD_02147at 2212.996 kb on + strand, within ECD_02147at 2213.104 kb on + strand, within ECD_02147at 2213.158 kb on + strand, within ECD_02147at 2213.193 kb on - strand, within ECD_02147at 2213.572 kb on - strandat 2213.608 kb on + strandat 2213.609 kb on - strandat 2213.763 kb on - strandat 2213.830 kb on + strandat 2213.830 kb on + strandat 2213.886 kb on - strand, within ECD_02148at 2214.074 kb on - strand, within ECD_02148at 2214.111 kb on - strand, within ECD_02148at 2214.307 kb on - strand, within ECD_02148at 2214.356 kb on + strand, within ECD_02148at 2214.589 kb on + strand, within ECD_02149at 2214.590 kb on - strand, within ECD_02149at 2214.590 kb on - strand, within ECD_02149

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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2,211,255 - ECD_02146 0.47 +1.1
2,211,255 - ECD_02146 0.47 +0.5
2,211,255 - ECD_02146 0.47 +1.9
2,211,342 + ECD_02146 0.51 +1.3
2,211,602 + ECD_02146 0.66 -1.2
2,211,607 - ECD_02146 0.66 +0.6
2,211,669 - ECD_02146 0.69 +0.0
2,211,669 - ECD_02146 0.69 +0.5
2,211,852 - ECD_02146 0.79 -1.5
2,211,914 + ECD_02146 0.83 +1.9
2,211,985 + ECD_02146 0.87 +0.3
2,212,227 - +0.4
2,212,236 - +0.3
2,212,348 + -1.0
2,212,479 + ECD_02147 0.18 +0.4
2,212,480 - ECD_02147 0.18 +1.3
2,212,531 - ECD_02147 0.22 +3.6
2,212,536 - ECD_02147 0.22 -0.2
2,212,996 + ECD_02147 0.55 +1.6
2,213,104 + ECD_02147 0.63 +0.2
2,213,158 + ECD_02147 0.67 -0.0
2,213,193 - ECD_02147 0.70 -1.0
2,213,572 - -0.0
2,213,608 + +0.0
2,213,609 - +0.1
2,213,763 - +0.3
2,213,830 + -0.0
2,213,830 + -0.9
2,213,886 - ECD_02148 0.12 -0.8
2,214,074 - ECD_02148 0.40 +0.7
2,214,111 - ECD_02148 0.46 -0.4
2,214,307 - ECD_02148 0.75 +1.3
2,214,356 + ECD_02148 0.83 -1.0
2,214,589 + ECD_02149 0.18 +0.1
2,214,590 - ECD_02149 0.18 -1.5
2,214,590 - ECD_02149 0.18 +0.3

Or see this region's nucleotide sequence