Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01787 and ECD_01788 are separated by 62 nucleotides ECD_01788 and ECD_01789 are separated by 12 nucleotides ECD_01789 and ECD_01790 are separated by 54 nucleotides ECD_01790 and ECD_01791 are separated by 428 nucleotides
ECD_01787: ECD_01787 - fused mannose-specific PTS enzymes: IIA component/IIB component, at 1,847,775 to 1,848,746
_01787
ECD_01788: ECD_01788 - mannose-specific enzyme IIC component of PTS, at 1,848,809 to 1,849,609
_01788
ECD_01789: ECD_01789 - mannose-specific enzyme IID component of PTS, at 1,849,622 to 1,850,473
_01789
ECD_01790: ECD_01790 - UPF0266 family inner membrane protein, at 1,850,528 to 1,850,986
_01790
ECD_01791: ECD_01791 - putative Mn(2+) efflux pump, mntR-regulated, at 1,851,415 to 1,851,981
_01791
Position (kb)
1849
1850
1851 Strain fitness (log2 ratio)
-1
0
1
2 at 1848.749 kb on + strand at 1848.749 kb on + strand at 1848.844 kb on + strand at 1849.150 kb on + strand, within ECD_01788 at 1849.541 kb on + strand at 1849.630 kb on + strand at 1849.729 kb on + strand, within ECD_01789 at 1849.729 kb on + strand, within ECD_01789 at 1849.975 kb on - strand, within ECD_01789 at 1850.123 kb on + strand, within ECD_01789 at 1850.374 kb on + strand, within ECD_01789 at 1851.240 kb on + strand at 1851.296 kb on + strand at 1851.356 kb on + strand at 1851.356 kb on + strand at 1851.357 kb on - strand at 1851.388 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 1,848,749 + -0.9 1,848,749 + +0.1 1,848,844 + +1.0 1,849,150 + ECD_01788 0.43 -0.4 1,849,541 + +0.1 1,849,630 + -0.3 1,849,729 + ECD_01789 0.13 +2.2 1,849,729 + ECD_01789 0.13 +0.3 1,849,975 - ECD_01789 0.41 +0.3 1,850,123 + ECD_01789 0.59 +0.7 1,850,374 + ECD_01789 0.88 +0.9 1,851,240 + -1.3 1,851,296 + +0.7 1,851,356 + -0.2 1,851,356 + +1.1 1,851,357 - -0.1 1,851,388 + -0.3
Or see this region's nucleotide sequence