Strain Fitness in Escherichia coli BL21 around ECD_01498

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01497 and ECD_01498 are separated by 136 nucleotidesECD_01498 and ECD_01499 are separated by 88 nucleotidesECD_01499 and ECD_01500 are separated by 176 nucleotides ECD_01497: ECD_01497 - dipeptidyl carboxypeptidase II, at 1,574,631 to 1,576,676 _01497 ECD_01498: ECD_01498 - NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase, at 1,576,813 to 1,577,559 _01498 ECD_01499: ECD_01499 - transcriptional repressor for rspAB, at 1,577,648 to 1,578,334 _01499 ECD_01500: ECD_01500 - selenoprotein, function unknown, at 1,578,511 to 1,578,714 _01500 Position (kb) 1576 1577 1578Strain fitness (log2 ratio) -1 0 1at 1577.146 kb on + strand, within ECD_01498at 1577.148 kb on + strand, within ECD_01498at 1577.624 kb on + strandat 1577.867 kb on + strand, within ECD_01499at 1578.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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1,577,146 + ECD_01498 0.45 +0.8
1,577,148 + ECD_01498 0.45 +1.2
1,577,624 + +1.2
1,577,867 + ECD_01499 0.32 -0.4
1,578,452 + +0.3

Or see this region's nucleotide sequence