Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01238 and ECD_01239 are separated by 91 nucleotides ECD_01239 and ECD_01240 are separated by 137 nucleotides ECD_01240 and ECD_01241 overlap by 4 nucleotides
ECD_01238: ECD_01238 - component I of anthranilate synthase, at 1,306,976 to 1,308,538
_01238
ECD_01239: ECD_01239 - trp operon leader peptide, at 1,308,630 to 1,308,674
_01239
ECD_01240: ECD_01240 - PHP domain protein, at 1,308,812 to 1,309,693
_01240
ECD_01241: ECD_01241 - putative RNA binding protein, at 1,309,690 to 1,310,310
_01241
Position (kb)
1308
1309
1310 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1307.895 kb on - strand, within ECD_01238 at 1308.355 kb on + strand, within ECD_01238 at 1308.617 kb on + strand at 1308.752 kb on + strand at 1308.840 kb on - strand at 1309.084 kb on + strand, within ECD_01240 at 1309.179 kb on + strand, within ECD_01240 at 1309.179 kb on + strand, within ECD_01240 at 1309.351 kb on - strand, within ECD_01240 at 1309.980 kb on + strand, within ECD_01241 at 1309.980 kb on + strand, within ECD_01241 at 1310.250 kb on + strand at 1310.259 kb on + strand at 1310.532 kb on + strand at 1310.607 kb on + strand at 1310.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 1,307,895 - ECD_01238 0.59 +1.5 1,308,355 + ECD_01238 0.88 +1.2 1,308,617 + -1.5 1,308,752 + +1.8 1,308,840 - +0.4 1,309,084 + ECD_01240 0.31 -0.1 1,309,179 + ECD_01240 0.42 -1.0 1,309,179 + ECD_01240 0.42 -0.5 1,309,351 - ECD_01240 0.61 -0.5 1,309,980 + ECD_01241 0.47 -0.3 1,309,980 + ECD_01241 0.47 +0.3 1,310,250 + -0.7 1,310,259 + -2.3 1,310,532 + -0.7 1,310,607 + -0.5 1,310,607 + -1.5
Or see this region's nucleotide sequence