Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01118 and ECD_01119 are separated by 118 nucleotides ECD_01119 and ECD_01120 are separated by 49 nucleotides ECD_01120 and ECD_01121 are separated by 57 nucleotides
ECD_01118: ECD_01118 - deacetylase of acs and cheY, chemotaxis regulator, at 1,182,890 to 1,183,729
_01118
ECD_01119: ECD_01119 - inner membrane protein, at 1,183,848 to 1,184,636
_01119
ECD_01120: ECD_01120 - DUF3592 family inner membrane protein, at 1,184,686 to 1,185,093
_01120
ECD_01121: ECD_01121 - spermidine/putrescine ABC transporter periplasmic binding protein, at 1,185,151 to 1,186,197
_01121
Position (kb) 1184
1185
1186 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1183.857 kb on - strand at 1185.461 kb on - strand, within ECD_01121 at 1185.478 kb on - strand, within ECD_01121 at 1185.546 kb on - strand, within ECD_01121 at 1185.612 kb on - strand, within ECD_01121 at 1185.811 kb on - strand, within ECD_01121 at 1185.945 kb on - strand, within ECD_01121 at 1185.945 kb on - strand, within ECD_01121 at 1186.002 kb on - strand, within ECD_01121 at 1186.002 kb on - strand, within ECD_01121 at 1186.023 kb on - strand, within ECD_01121
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 1,183,857 - +1.2 1,185,461 - ECD_01121 0.30 +0.2 1,185,478 - ECD_01121 0.31 -3.6 1,185,546 - ECD_01121 0.38 -2.0 1,185,612 - ECD_01121 0.44 -1.3 1,185,811 - ECD_01121 0.63 +1.4 1,185,945 - ECD_01121 0.76 -2.6 1,185,945 - ECD_01121 0.76 -1.9 1,186,002 - ECD_01121 0.81 -1.9 1,186,002 - ECD_01121 0.81 -0.4 1,186,023 - ECD_01121 0.83 -2.4
Or see this region's nucleotide sequence