Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01015 and ECD_01016 are separated by 230 nucleotides ECD_01016 and ECD_01017 are separated by 39 nucleotides ECD_01017 and ECD_01018 are separated by 422 nucleotides
ECD_01015: ECD_01015 - pyrimidine oxygenase, FMN-dependent, at 1,077,145 to 1,078,293
_01015
ECD_01016: ECD_01016 - rut operon transcriptional repressor for, at 1,078,524 to 1,079,162
_01016
ECD_01017: ECD_01017 - fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase, at 1,079,202 to 1,083,164
_01017
ECD_01018: ECD_01018 - proline:sodium symporter, at 1,083,587 to 1,085,095
_01018
Position (kb)
1079
1080
1081
1082
1083
1084 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1079.182 kb on - strand at 1079.273 kb on - strand at 1079.448 kb on - strand at 1079.482 kb on - strand at 1079.482 kb on - strand at 1079.685 kb on - strand, within ECD_01017 at 1079.685 kb on - strand, within ECD_01017 at 1079.689 kb on - strand, within ECD_01017 at 1079.689 kb on - strand, within ECD_01017 at 1079.689 kb on - strand, within ECD_01017 at 1079.689 kb on - strand, within ECD_01017 at 1079.934 kb on - strand, within ECD_01017 at 1079.937 kb on - strand, within ECD_01017 at 1079.937 kb on - strand, within ECD_01017 at 1079.937 kb on - strand, within ECD_01017 at 1079.948 kb on - strand, within ECD_01017 at 1079.948 kb on - strand, within ECD_01017 at 1079.948 kb on - strand, within ECD_01017 at 1079.988 kb on - strand, within ECD_01017 at 1080.457 kb on - strand, within ECD_01017 at 1080.457 kb on - strand, within ECD_01017 at 1080.459 kb on + strand, within ECD_01017 at 1080.460 kb on - strand, within ECD_01017 at 1080.462 kb on + strand, within ECD_01017 at 1080.463 kb on - strand, within ECD_01017 at 1080.463 kb on - strand, within ECD_01017 at 1080.815 kb on + strand, within ECD_01017 at 1080.843 kb on - strand, within ECD_01017 at 1080.987 kb on - strand, within ECD_01017 at 1081.114 kb on - strand, within ECD_01017 at 1081.151 kb on + strand, within ECD_01017 at 1081.152 kb on - strand, within ECD_01017 at 1081.510 kb on + strand, within ECD_01017 at 1081.551 kb on - strand, within ECD_01017 at 1081.729 kb on - strand, within ECD_01017 at 1081.784 kb on - strand, within ECD_01017 at 1081.799 kb on - strand, within ECD_01017 at 1082.203 kb on + strand, within ECD_01017 at 1082.204 kb on - strand, within ECD_01017 at 1082.204 kb on - strand, within ECD_01017 at 1082.266 kb on + strand, within ECD_01017 at 1082.266 kb on + strand, within ECD_01017 at 1082.267 kb on - strand, within ECD_01017 at 1082.267 kb on - strand, within ECD_01017 at 1082.315 kb on - strand, within ECD_01017 at 1082.589 kb on - strand, within ECD_01017 at 1082.643 kb on - strand, within ECD_01017 at 1082.713 kb on - strand, within ECD_01017 at 1083.065 kb on + strand at 1083.171 kb on - strand at 1083.171 kb on - strand at 1083.539 kb on + strand at 1083.595 kb on + strand at 1083.626 kb on + strand at 1083.642 kb on + strand at 1083.689 kb on + strand at 1083.691 kb on + strand at 1083.691 kb on + strand at 1083.691 kb on + strand at 1084.152 kb on + strand, within ECD_01018
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 1,079,182 - -0.6 1,079,273 - +0.7 1,079,448 - -0.7 1,079,482 - -0.1 1,079,482 - -0.1 1,079,685 - ECD_01017 0.12 -1.1 1,079,685 - ECD_01017 0.12 -0.1 1,079,689 - ECD_01017 0.12 +0.1 1,079,689 - ECD_01017 0.12 +1.3 1,079,689 - ECD_01017 0.12 +0.6 1,079,689 - ECD_01017 0.12 +0.5 1,079,934 - ECD_01017 0.18 +0.1 1,079,937 - ECD_01017 0.19 -0.1 1,079,937 - ECD_01017 0.19 -0.4 1,079,937 - ECD_01017 0.19 +0.1 1,079,948 - ECD_01017 0.19 +0.3 1,079,948 - ECD_01017 0.19 -2.0 1,079,948 - ECD_01017 0.19 +2.6 1,079,988 - ECD_01017 0.20 +0.6 1,080,457 - ECD_01017 0.32 -1.5 1,080,457 - ECD_01017 0.32 +0.2 1,080,459 + ECD_01017 0.32 -0.3 1,080,460 - ECD_01017 0.32 -0.9 1,080,462 + ECD_01017 0.32 +0.0 1,080,463 - ECD_01017 0.32 -0.8 1,080,463 - ECD_01017 0.32 -1.8 1,080,815 + ECD_01017 0.41 -1.3 1,080,843 - ECD_01017 0.41 -0.9 1,080,987 - ECD_01017 0.45 -0.3 1,081,114 - ECD_01017 0.48 -0.2 1,081,151 + ECD_01017 0.49 +0.6 1,081,152 - ECD_01017 0.49 -0.9 1,081,510 + ECD_01017 0.58 +1.2 1,081,551 - ECD_01017 0.59 +0.5 1,081,729 - ECD_01017 0.64 +0.3 1,081,784 - ECD_01017 0.65 +1.1 1,081,799 - ECD_01017 0.66 +0.3 1,082,203 + ECD_01017 0.76 -1.7 1,082,204 - ECD_01017 0.76 +0.3 1,082,204 - ECD_01017 0.76 -0.1 1,082,266 + ECD_01017 0.77 -0.4 1,082,266 + ECD_01017 0.77 -1.7 1,082,267 - ECD_01017 0.77 +0.6 1,082,267 - ECD_01017 0.77 +2.4 1,082,315 - ECD_01017 0.79 +1.1 1,082,589 - ECD_01017 0.85 -0.5 1,082,643 - ECD_01017 0.87 +0.0 1,082,713 - ECD_01017 0.89 -0.2 1,083,065 + -0.4 1,083,171 - -0.2 1,083,171 - +0.8 1,083,539 + +0.1 1,083,595 + +0.4 1,083,626 + +1.9 1,083,642 + +0.7 1,083,689 + +0.8 1,083,691 + +1.6 1,083,691 + +0.7 1,083,691 + +0.6 1,084,152 + ECD_01018 0.37 +0.6
Or see this region's nucleotide sequence