Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00984 and ECD_00985 are separated by 19 nucleotides ECD_00985 and ECD_00986 overlap by 13 nucleotides ECD_00986 and ECD_00987 are separated by 45 nucleotides
ECD_00984: ECD_00984 - tyrosine-protein kinase, role in O-antigen capsule formation, at 1,047,119 to 1,049,299
_00984
ECD_00985: ECD_00985 - O-antigen capsule forming protein-tyrosine-phosphatase; Etk-P dephosphorylase, at 1,049,319 to 1,049,765
_00985
ECD_00986: ECD_00986 - putative O-antigen capsule outer membrane auxillary protein export channel, at 1,049,753 to 1,050,892
_00986
ECD_00987: ECD_00987 - putative O-antigen capsule production periplasmic protein, at 1,050,938 to 1,053,034
_00987
Position (kb)
1049
1050
1051 Strain fitness (log2 ratio)
-1
0
1 at 1048.778 kb on - strand, within ECD_00984 at 1048.812 kb on + strand, within ECD_00984 at 1048.812 kb on + strand, within ECD_00984 at 1049.122 kb on + strand at 1049.308 kb on - strand at 1049.495 kb on + strand, within ECD_00985 at 1049.665 kb on - strand, within ECD_00985 at 1050.373 kb on - strand, within ECD_00986 at 1050.504 kb on + strand, within ECD_00986 at 1050.646 kb on - strand, within ECD_00986 at 1050.646 kb on - strand, within ECD_00986 at 1050.763 kb on - strand, within ECD_00986 at 1050.829 kb on + strand at 1050.829 kb on + strand at 1050.830 kb on - strand at 1051.109 kb on - strand at 1051.139 kb on + strand at 1051.139 kb on + strand at 1051.139 kb on + strand at 1051.359 kb on + strand, within ECD_00987 at 1051.360 kb on - strand, within ECD_00987 at 1051.360 kb on - strand, within ECD_00987 at 1051.455 kb on + strand, within ECD_00987 at 1051.456 kb on - strand, within ECD_00987 at 1051.597 kb on + strand, within ECD_00987 at 1051.617 kb on + strand, within ECD_00987 at 1051.755 kb on + strand, within ECD_00987
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 1,048,778 - ECD_00984 0.76 +0.3 1,048,812 + ECD_00984 0.78 -0.4 1,048,812 + ECD_00984 0.78 +1.6 1,049,122 + -0.1 1,049,308 - -1.7 1,049,495 + ECD_00985 0.39 -1.7 1,049,665 - ECD_00985 0.77 +0.6 1,050,373 - ECD_00986 0.54 +1.5 1,050,504 + ECD_00986 0.66 -1.0 1,050,646 - ECD_00986 0.78 +0.3 1,050,646 - ECD_00986 0.78 -0.4 1,050,763 - ECD_00986 0.89 -0.7 1,050,829 + -0.9 1,050,829 + -1.0 1,050,830 - +0.6 1,051,109 - -0.5 1,051,139 + -0.4 1,051,139 + +0.5 1,051,139 + +1.7 1,051,359 + ECD_00987 0.20 -1.4 1,051,360 - ECD_00987 0.20 +1.3 1,051,360 - ECD_00987 0.20 -0.0 1,051,455 + ECD_00987 0.25 +0.7 1,051,456 - ECD_00987 0.25 -0.5 1,051,597 + ECD_00987 0.31 +1.1 1,051,617 + ECD_00987 0.32 -0.7 1,051,755 + ECD_00987 0.39 -0.0
Or see this region's nucleotide sequence