Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00153 and ECD_00154 are separated by 224 nucleotides ECD_00154 and ECD_00155 are separated by 81 nucleotides ECD_00155 and ECD_00156 are separated by 46 nucleotides
ECD_00153: ECD_00153 - glutamate-1-semialdehyde aminotransferase (aminomutase), at 176,445 to 177,725
_00153
ECD_00154: ECD_00154 - H(+)/Cl(-) exchange transporter, at 177,950 to 179,371
_00154
ECD_00155: ECD_00155 - iron-sulfur cluster insertion protein, at 179,453 to 179,797
_00155
ECD_00156: ECD_00156 - UPF0126 family inner membrane protein, at 179,844 to 180,467
_00156
Position (kb) 177
178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.768 kb on + strand at 177.768 kb on + strand at 177.768 kb on + strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.779 kb on + strand at 177.846 kb on - strand at 177.870 kb on + strand at 177.927 kb on + strand at 177.972 kb on + strand at 178.061 kb on - strand at 178.141 kb on + strand, within ECD_00154 at 178.156 kb on - strand, within ECD_00154 at 178.156 kb on - strand, within ECD_00154 at 178.159 kb on + strand, within ECD_00154 at 178.160 kb on - strand, within ECD_00154 at 178.169 kb on - strand, within ECD_00154 at 178.429 kb on + strand, within ECD_00154 at 178.429 kb on + strand, within ECD_00154 at 178.475 kb on - strand, within ECD_00154 at 178.578 kb on - strand, within ECD_00154 at 178.595 kb on - strand, within ECD_00154 at 178.607 kb on - strand, within ECD_00154 at 178.618 kb on + strand, within ECD_00154 at 178.618 kb on + strand, within ECD_00154 at 178.630 kb on + strand, within ECD_00154 at 178.630 kb on + strand, within ECD_00154 at 178.631 kb on - strand, within ECD_00154 at 178.631 kb on - strand, within ECD_00154 at 178.631 kb on - strand, within ECD_00154 at 178.631 kb on - strand, within ECD_00154 at 178.697 kb on - strand, within ECD_00154 at 178.713 kb on - strand, within ECD_00154 at 178.827 kb on + strand, within ECD_00154 at 178.983 kb on + strand, within ECD_00154 at 178.983 kb on + strand, within ECD_00154 at 178.983 kb on + strand, within ECD_00154 at 178.984 kb on - strand, within ECD_00154 at 179.120 kb on - strand, within ECD_00154 at 179.152 kb on + strand, within ECD_00154 at 179.153 kb on - strand, within ECD_00154 at 179.204 kb on + strand, within ECD_00154 at 179.205 kb on - strand, within ECD_00154 at 179.227 kb on + strand, within ECD_00154 at 179.228 kb on - strand, within ECD_00154 at 179.250 kb on + strand at 179.251 kb on - strand at 179.251 kb on - strand at 179.390 kb on - strand at 179.393 kb on + strand at 179.452 kb on + strand at 179.788 kb on + strand at 179.789 kb on - strand at 179.791 kb on + strand at 179.791 kb on + strand at 179.882 kb on + strand at 179.882 kb on + strand at 179.883 kb on - strand at 179.883 kb on - strand at 179.974 kb on + strand, within ECD_00156 at 180.006 kb on - strand, within ECD_00156 at 180.092 kb on + strand, within ECD_00156 at 180.104 kb on + strand, within ECD_00156 at 180.137 kb on + strand, within ECD_00156 at 180.301 kb on - strand, within ECD_00156 at 180.345 kb on + strand, within ECD_00156
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 177,768 + -1.9 177,768 + -1.7 177,768 + -0.7 177,769 - +0.4 177,769 - +0.3 177,769 - -0.2 177,769 - +0.5 177,769 - -0.4 177,769 - +0.6 177,769 - -0.6 177,779 + -2.3 177,846 - +1.4 177,870 + +0.6 177,927 + +0.3 177,972 + -0.1 178,061 - +0.1 178,141 + ECD_00154 0.13 +1.3 178,156 - ECD_00154 0.14 -0.9 178,156 - ECD_00154 0.14 -0.5 178,159 + ECD_00154 0.15 -0.3 178,160 - ECD_00154 0.15 +1.7 178,169 - ECD_00154 0.15 -0.3 178,429 + ECD_00154 0.34 +1.7 178,429 + ECD_00154 0.34 +0.7 178,475 - ECD_00154 0.37 -0.9 178,578 - ECD_00154 0.44 +1.1 178,595 - ECD_00154 0.45 -1.3 178,607 - ECD_00154 0.46 -1.5 178,618 + ECD_00154 0.47 +0.2 178,618 + ECD_00154 0.47 -0.7 178,630 + ECD_00154 0.48 +0.4 178,630 + ECD_00154 0.48 +0.3 178,631 - ECD_00154 0.48 -1.0 178,631 - ECD_00154 0.48 +0.0 178,631 - ECD_00154 0.48 +0.5 178,631 - ECD_00154 0.48 -0.2 178,697 - ECD_00154 0.53 +0.5 178,713 - ECD_00154 0.54 +1.1 178,827 + ECD_00154 0.62 -0.1 178,983 + ECD_00154 0.73 -1.4 178,983 + ECD_00154 0.73 +0.9 178,983 + ECD_00154 0.73 -0.1 178,984 - ECD_00154 0.73 +0.2 179,120 - ECD_00154 0.82 -0.3 179,152 + ECD_00154 0.85 -1.1 179,153 - ECD_00154 0.85 -1.4 179,204 + ECD_00154 0.88 +0.2 179,205 - ECD_00154 0.88 -0.3 179,227 + ECD_00154 0.90 -0.9 179,228 - ECD_00154 0.90 +1.3 179,250 + -0.6 179,251 - -1.8 179,251 - +2.1 179,390 - -0.0 179,393 + -0.1 179,452 + +2.1 179,788 + -1.2 179,789 - +1.5 179,791 + -0.1 179,791 + -0.6 179,882 + -0.5 179,882 + +0.9 179,883 - +0.3 179,883 - +1.5 179,974 + ECD_00156 0.21 +1.0 180,006 - ECD_00156 0.26 +0.3 180,092 + ECD_00156 0.40 +0.5 180,104 + ECD_00156 0.42 +0.3 180,137 + ECD_00156 0.47 -0.5 180,301 - ECD_00156 0.73 -0.1 180,345 + ECD_00156 0.80 -0.4
Or see this region's nucleotide sequence