Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02677 and ECD_02678 are separated by 12 nucleotides ECD_02678 and ECD_04354 are separated by 352 nucleotides ECD_04354 and ECD_02679 are separated by 185 nucleotides ECD_02679 and ECD_02680 are separated by 68 nucleotides
ECD_02677: ECD_02677 - PEP-protein phosphotransferase enzyme I; GAF domain containing protein, at 2,804,469 to 2,806,715
_02677
ECD_02678: ECD_02678 - RNA pyrophosphohydrolase, at 2,806,728 to 2,807,258
_02678
ECD_04354: ECD_04354 - nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor, at 2,807,611 to 2,807,757
_04354
ECD_02679: ECD_02679 - methyl-directed mismatch repair protein, at 2,807,943 to 2,808,632
_02679
ECD_02680: ECD_02680 - UPF0053 family inner membrane protein, at 2,808,701 to 2,809,414
_02680
Position (kb)
2807
2808 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2806.647 kb on - strand at 2806.647 kb on - strand at 2806.647 kb on - strand at 2806.647 kb on - strand at 2806.647 kb on - strand at 2806.681 kb on - strand at 2806.715 kb on + strand at 2806.715 kb on + strand at 2806.715 kb on + strand at 2806.715 kb on + strand at 2806.715 kb on + strand at 2806.716 kb on - strand at 2806.716 kb on - strand at 2806.716 kb on - strand at 2806.716 kb on - strand at 2806.716 kb on - strand at 2806.716 kb on - strand at 2806.716 kb on - strand at 2806.716 kb on - strand at 2806.716 kb on - strand at 2806.716 kb on - strand at 2806.716 kb on - strand at 2806.729 kb on + strand at 2806.729 kb on + strand at 2806.730 kb on - strand at 2806.730 kb on - strand at 2806.730 kb on - strand at 2806.739 kb on + strand at 2806.739 kb on + strand at 2806.740 kb on - strand at 2806.740 kb on - strand at 2806.740 kb on - strand at 2806.748 kb on - strand at 2807.275 kb on - strand at 2807.283 kb on - strand at 2807.283 kb on - strand at 2807.283 kb on - strand at 2807.283 kb on - strand at 2807.283 kb on - strand at 2807.283 kb on - strand at 2807.283 kb on - strand at 2807.285 kb on - strand at 2807.285 kb on - strand at 2807.287 kb on - strand at 2807.287 kb on - strand at 2807.304 kb on - strand at 2807.341 kb on + strand at 2807.349 kb on - strand at 2807.374 kb on - strand at 2807.386 kb on - strand at 2807.647 kb on + strand, within ECD_04354 at 2807.667 kb on + strand, within ECD_04354 at 2807.700 kb on + strand, within ECD_04354 at 2807.701 kb on - strand, within ECD_04354 at 2807.701 kb on - strand, within ECD_04354 at 2807.701 kb on - strand, within ECD_04354 at 2807.701 kb on - strand, within ECD_04354 at 2807.714 kb on - strand, within ECD_04354 at 2807.762 kb on + strand at 2807.763 kb on - strand at 2807.763 kb on - strand at 2807.763 kb on - strand at 2807.849 kb on + strand at 2807.907 kb on + strand at 2807.934 kb on + strand at 2808.023 kb on + strand, within ECD_02679 at 2808.023 kb on + strand, within ECD_02679 at 2808.023 kb on + strand, within ECD_02679 at 2808.023 kb on + strand, within ECD_02679 at 2808.023 kb on + strand, within ECD_02679 at 2808.023 kb on + strand, within ECD_02679 at 2808.024 kb on - strand, within ECD_02679 at 2808.024 kb on - strand, within ECD_02679 at 2808.024 kb on - strand, within ECD_02679 at 2808.024 kb on - strand, within ECD_02679 at 2808.024 kb on - strand, within ECD_02679 at 2808.024 kb on - strand, within ECD_02679 at 2808.024 kb on - strand, within ECD_02679 at 2808.024 kb on - strand, within ECD_02679 at 2808.024 kb on - strand, within ECD_02679 at 2808.073 kb on + strand, within ECD_02679 at 2808.074 kb on - strand, within ECD_02679 at 2808.103 kb on + strand, within ECD_02679 at 2808.137 kb on + strand, within ECD_02679 at 2808.138 kb on - strand, within ECD_02679 at 2808.176 kb on + strand, within ECD_02679 at 2808.177 kb on - strand, within ECD_02679 at 2808.182 kb on + strand, within ECD_02679 at 2808.182 kb on + strand, within ECD_02679 at 2808.183 kb on - strand, within ECD_02679 at 2808.195 kb on - strand, within ECD_02679 at 2808.403 kb on + strand, within ECD_02679 at 2808.403 kb on + strand, within ECD_02679 at 2808.424 kb on + strand, within ECD_02679 at 2808.431 kb on + strand, within ECD_02679 at 2808.484 kb on + strand, within ECD_02679 at 2808.484 kb on + strand, within ECD_02679 at 2808.490 kb on + strand, within ECD_02679 at 2808.577 kb on - strand at 2808.577 kb on - strand at 2808.604 kb on + strand at 2808.605 kb on - strand at 2808.664 kb on - strand at 2808.664 kb on - strand at 2808.665 kb on + strand at 2808.666 kb on - strand at 2808.666 kb on - strand at 2808.666 kb on - strand at 2808.666 kb on - strand at 2808.666 kb on - strand at 2808.666 kb on - strand at 2808.666 kb on - strand at 2808.669 kb on + strand at 2808.698 kb on + strand at 2808.698 kb on + strand at 2808.698 kb on + strand at 2808.698 kb on + strand at 2808.699 kb on - strand at 2808.705 kb on + strand at 2808.705 kb on + strand at 2808.705 kb on + strand at 2808.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,806,647 - -0.3 2,806,647 - +0.9 2,806,647 - +0.4 2,806,647 - -0.1 2,806,647 - +0.7 2,806,681 - -0.6 2,806,715 + +0.7 2,806,715 + +0.4 2,806,715 + -0.7 2,806,715 + -0.3 2,806,715 + -0.4 2,806,716 - +0.9 2,806,716 - +0.0 2,806,716 - +0.9 2,806,716 - -0.1 2,806,716 - +0.1 2,806,716 - -0.6 2,806,716 - -1.6 2,806,716 - +0.1 2,806,716 - +0.6 2,806,716 - +0.6 2,806,716 - +0.7 2,806,729 + +0.0 2,806,729 + +0.5 2,806,730 - -0.3 2,806,730 - -1.2 2,806,730 - -0.6 2,806,739 + -1.2 2,806,739 + -0.0 2,806,740 - -0.5 2,806,740 - -0.1 2,806,740 - -0.4 2,806,748 - -0.2 2,807,275 - -2.8 2,807,283 - -1.3 2,807,283 - +0.4 2,807,283 - +0.6 2,807,283 - +0.5 2,807,283 - +0.4 2,807,283 - -1.4 2,807,283 - +0.3 2,807,285 - -0.1 2,807,285 - +0.1 2,807,287 - +1.4 2,807,287 - +0.4 2,807,304 - -0.2 2,807,341 + -0.2 2,807,349 - +0.6 2,807,374 - -0.4 2,807,386 - +0.3 2,807,647 + ECD_04354 0.24 -0.7 2,807,667 + ECD_04354 0.38 -1.6 2,807,700 + ECD_04354 0.61 +0.5 2,807,701 - ECD_04354 0.61 -0.8 2,807,701 - ECD_04354 0.61 -1.0 2,807,701 - ECD_04354 0.61 -1.0 2,807,701 - ECD_04354 0.61 -0.3 2,807,714 - ECD_04354 0.70 -0.1 2,807,762 + -0.1 2,807,763 - +0.3 2,807,763 - -0.6 2,807,763 - -1.6 2,807,849 + -0.6 2,807,907 + -0.9 2,807,934 + +0.6 2,808,023 + ECD_02679 0.12 +1.3 2,808,023 + ECD_02679 0.12 +0.8 2,808,023 + ECD_02679 0.12 +0.3 2,808,023 + ECD_02679 0.12 -0.9 2,808,023 + ECD_02679 0.12 -0.2 2,808,023 + ECD_02679 0.12 +0.2 2,808,024 - ECD_02679 0.12 -0.0 2,808,024 - ECD_02679 0.12 -0.4 2,808,024 - ECD_02679 0.12 -0.1 2,808,024 - ECD_02679 0.12 -0.9 2,808,024 - ECD_02679 0.12 -0.0 2,808,024 - ECD_02679 0.12 +0.7 2,808,024 - ECD_02679 0.12 +0.1 2,808,024 - ECD_02679 0.12 +0.0 2,808,024 - ECD_02679 0.12 -1.1 2,808,073 + ECD_02679 0.19 -1.1 2,808,074 - ECD_02679 0.19 +0.1 2,808,103 + ECD_02679 0.23 +0.3 2,808,137 + ECD_02679 0.28 +0.1 2,808,138 - ECD_02679 0.28 +0.0 2,808,176 + ECD_02679 0.34 -0.2 2,808,177 - ECD_02679 0.34 -1.9 2,808,182 + ECD_02679 0.35 +0.3 2,808,182 + ECD_02679 0.35 +0.1 2,808,183 - ECD_02679 0.35 -0.3 2,808,195 - ECD_02679 0.37 -0.5 2,808,403 + ECD_02679 0.67 -0.0 2,808,403 + ECD_02679 0.67 -0.3 2,808,424 + ECD_02679 0.70 +0.6 2,808,431 + ECD_02679 0.71 -1.3 2,808,484 + ECD_02679 0.78 -0.1 2,808,484 + ECD_02679 0.78 -1.1 2,808,490 + ECD_02679 0.79 +0.1 2,808,577 - +0.2 2,808,577 - -2.1 2,808,604 + -0.2 2,808,605 - +0.4 2,808,664 - +1.9 2,808,664 - -0.6 2,808,665 + +0.2 2,808,666 - +0.3 2,808,666 - +0.4 2,808,666 - +0.2 2,808,666 - +1.4 2,808,666 - +1.3 2,808,666 - -0.7 2,808,666 - +1.6 2,808,669 + +0.5 2,808,698 + -1.8 2,808,698 + -0.3 2,808,698 + -1.0 2,808,698 + +0.2 2,808,699 - +0.3 2,808,705 + -0.2 2,808,705 + +1.0 2,808,705 + -0.7 2,808,705 + +0.6
Or see this region's nucleotide sequence