Strain Fitness in Escherichia coli BL21 around ECD_04354

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02677 and ECD_02678 are separated by 12 nucleotidesECD_02678 and ECD_04354 are separated by 352 nucleotidesECD_04354 and ECD_02679 are separated by 185 nucleotidesECD_02679 and ECD_02680 are separated by 68 nucleotides ECD_02677: ECD_02677 - PEP-protein phosphotransferase enzyme I; GAF domain containing protein, at 2,804,469 to 2,806,715 _02677 ECD_02678: ECD_02678 - RNA pyrophosphohydrolase, at 2,806,728 to 2,807,258 _02678 ECD_04354: ECD_04354 - nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor, at 2,807,611 to 2,807,757 _04354 ECD_02679: ECD_02679 - methyl-directed mismatch repair protein, at 2,807,943 to 2,808,632 _02679 ECD_02680: ECD_02680 - UPF0053 family inner membrane protein, at 2,808,701 to 2,809,414 _02680 Position (kb) 2807 2808Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2806.647 kb on - strandat 2806.647 kb on - strandat 2806.647 kb on - strandat 2806.647 kb on - strandat 2806.647 kb on - strandat 2806.681 kb on - strandat 2806.715 kb on + strandat 2806.715 kb on + strandat 2806.715 kb on + strandat 2806.715 kb on + strandat 2806.715 kb on + strandat 2806.716 kb on - strandat 2806.716 kb on - strandat 2806.716 kb on - strandat 2806.716 kb on - strandat 2806.716 kb on - strandat 2806.716 kb on - strandat 2806.716 kb on - strandat 2806.716 kb on - strandat 2806.716 kb on - strandat 2806.716 kb on - strandat 2806.716 kb on - strandat 2806.729 kb on + strandat 2806.729 kb on + strandat 2806.730 kb on - strandat 2806.730 kb on - strandat 2806.730 kb on - strandat 2806.739 kb on + strandat 2806.739 kb on + strandat 2806.740 kb on - strandat 2806.740 kb on - strandat 2806.740 kb on - strandat 2806.748 kb on - strandat 2807.275 kb on - strandat 2807.283 kb on - strandat 2807.283 kb on - strandat 2807.283 kb on - strandat 2807.283 kb on - strandat 2807.283 kb on - strandat 2807.283 kb on - strandat 2807.283 kb on - strandat 2807.285 kb on - strandat 2807.285 kb on - strandat 2807.287 kb on - strandat 2807.287 kb on - strandat 2807.304 kb on - strandat 2807.341 kb on + strandat 2807.349 kb on - strandat 2807.374 kb on - strandat 2807.386 kb on - strandat 2807.647 kb on + strand, within ECD_04354at 2807.667 kb on + strand, within ECD_04354at 2807.700 kb on + strand, within ECD_04354at 2807.701 kb on - strand, within ECD_04354at 2807.701 kb on - strand, within ECD_04354at 2807.701 kb on - strand, within ECD_04354at 2807.701 kb on - strand, within ECD_04354at 2807.714 kb on - strand, within ECD_04354at 2807.762 kb on + strandat 2807.763 kb on - strandat 2807.763 kb on - strandat 2807.763 kb on - strandat 2807.849 kb on + strandat 2807.907 kb on + strandat 2807.934 kb on + strandat 2808.023 kb on + strand, within ECD_02679at 2808.023 kb on + strand, within ECD_02679at 2808.023 kb on + strand, within ECD_02679at 2808.023 kb on + strand, within ECD_02679at 2808.023 kb on + strand, within ECD_02679at 2808.023 kb on + strand, within ECD_02679at 2808.024 kb on - strand, within ECD_02679at 2808.024 kb on - strand, within ECD_02679at 2808.024 kb on - strand, within ECD_02679at 2808.024 kb on - strand, within ECD_02679at 2808.024 kb on - strand, within ECD_02679at 2808.024 kb on - strand, within ECD_02679at 2808.024 kb on - strand, within ECD_02679at 2808.024 kb on - strand, within ECD_02679at 2808.024 kb on - strand, within ECD_02679at 2808.073 kb on + strand, within ECD_02679at 2808.074 kb on - strand, within ECD_02679at 2808.103 kb on + strand, within ECD_02679at 2808.137 kb on + strand, within ECD_02679at 2808.138 kb on - strand, within ECD_02679at 2808.176 kb on + strand, within ECD_02679at 2808.177 kb on - strand, within ECD_02679at 2808.182 kb on + strand, within ECD_02679at 2808.182 kb on + strand, within ECD_02679at 2808.183 kb on - strand, within ECD_02679at 2808.195 kb on - strand, within ECD_02679at 2808.403 kb on + strand, within ECD_02679at 2808.403 kb on + strand, within ECD_02679at 2808.424 kb on + strand, within ECD_02679at 2808.431 kb on + strand, within ECD_02679at 2808.484 kb on + strand, within ECD_02679at 2808.484 kb on + strand, within ECD_02679at 2808.490 kb on + strand, within ECD_02679at 2808.577 kb on - strandat 2808.577 kb on - strandat 2808.604 kb on + strandat 2808.605 kb on - strandat 2808.664 kb on - strandat 2808.664 kb on - strandat 2808.665 kb on + strandat 2808.666 kb on - strandat 2808.666 kb on - strandat 2808.666 kb on - strandat 2808.666 kb on - strandat 2808.666 kb on - strandat 2808.666 kb on - strandat 2808.666 kb on - strandat 2808.669 kb on + strandat 2808.698 kb on + strandat 2808.698 kb on + strandat 2808.698 kb on + strandat 2808.698 kb on + strandat 2808.699 kb on - strandat 2808.705 kb on + strandat 2808.705 kb on + strandat 2808.705 kb on + strandat 2808.705 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,806,647 - -0.3
2,806,647 - +0.9
2,806,647 - +0.4
2,806,647 - -0.1
2,806,647 - +0.7
2,806,681 - -0.6
2,806,715 + +0.7
2,806,715 + +0.4
2,806,715 + -0.7
2,806,715 + -0.3
2,806,715 + -0.4
2,806,716 - +0.9
2,806,716 - +0.0
2,806,716 - +0.9
2,806,716 - -0.1
2,806,716 - +0.1
2,806,716 - -0.6
2,806,716 - -1.6
2,806,716 - +0.1
2,806,716 - +0.6
2,806,716 - +0.6
2,806,716 - +0.7
2,806,729 + +0.0
2,806,729 + +0.5
2,806,730 - -0.3
2,806,730 - -1.2
2,806,730 - -0.6
2,806,739 + -1.2
2,806,739 + -0.0
2,806,740 - -0.5
2,806,740 - -0.1
2,806,740 - -0.4
2,806,748 - -0.2
2,807,275 - -2.8
2,807,283 - -1.3
2,807,283 - +0.4
2,807,283 - +0.6
2,807,283 - +0.5
2,807,283 - +0.4
2,807,283 - -1.4
2,807,283 - +0.3
2,807,285 - -0.1
2,807,285 - +0.1
2,807,287 - +1.4
2,807,287 - +0.4
2,807,304 - -0.2
2,807,341 + -0.2
2,807,349 - +0.6
2,807,374 - -0.4
2,807,386 - +0.3
2,807,647 + ECD_04354 0.24 -0.7
2,807,667 + ECD_04354 0.38 -1.6
2,807,700 + ECD_04354 0.61 +0.5
2,807,701 - ECD_04354 0.61 -0.8
2,807,701 - ECD_04354 0.61 -1.0
2,807,701 - ECD_04354 0.61 -1.0
2,807,701 - ECD_04354 0.61 -0.3
2,807,714 - ECD_04354 0.70 -0.1
2,807,762 + -0.1
2,807,763 - +0.3
2,807,763 - -0.6
2,807,763 - -1.6
2,807,849 + -0.6
2,807,907 + -0.9
2,807,934 + +0.6
2,808,023 + ECD_02679 0.12 +1.3
2,808,023 + ECD_02679 0.12 +0.8
2,808,023 + ECD_02679 0.12 +0.3
2,808,023 + ECD_02679 0.12 -0.9
2,808,023 + ECD_02679 0.12 -0.2
2,808,023 + ECD_02679 0.12 +0.2
2,808,024 - ECD_02679 0.12 -0.0
2,808,024 - ECD_02679 0.12 -0.4
2,808,024 - ECD_02679 0.12 -0.1
2,808,024 - ECD_02679 0.12 -0.9
2,808,024 - ECD_02679 0.12 -0.0
2,808,024 - ECD_02679 0.12 +0.7
2,808,024 - ECD_02679 0.12 +0.1
2,808,024 - ECD_02679 0.12 +0.0
2,808,024 - ECD_02679 0.12 -1.1
2,808,073 + ECD_02679 0.19 -1.1
2,808,074 - ECD_02679 0.19 +0.1
2,808,103 + ECD_02679 0.23 +0.3
2,808,137 + ECD_02679 0.28 +0.1
2,808,138 - ECD_02679 0.28 +0.0
2,808,176 + ECD_02679 0.34 -0.2
2,808,177 - ECD_02679 0.34 -1.9
2,808,182 + ECD_02679 0.35 +0.3
2,808,182 + ECD_02679 0.35 +0.1
2,808,183 - ECD_02679 0.35 -0.3
2,808,195 - ECD_02679 0.37 -0.5
2,808,403 + ECD_02679 0.67 -0.0
2,808,403 + ECD_02679 0.67 -0.3
2,808,424 + ECD_02679 0.70 +0.6
2,808,431 + ECD_02679 0.71 -1.3
2,808,484 + ECD_02679 0.78 -0.1
2,808,484 + ECD_02679 0.78 -1.1
2,808,490 + ECD_02679 0.79 +0.1
2,808,577 - +0.2
2,808,577 - -2.1
2,808,604 + -0.2
2,808,605 - +0.4
2,808,664 - +1.9
2,808,664 - -0.6
2,808,665 + +0.2
2,808,666 - +0.3
2,808,666 - +0.4
2,808,666 - +0.2
2,808,666 - +1.4
2,808,666 - +1.3
2,808,666 - -0.7
2,808,666 - +1.6
2,808,669 + +0.5
2,808,698 + -1.8
2,808,698 + -0.3
2,808,698 + -1.0
2,808,698 + +0.2
2,808,699 - +0.3
2,808,705 + -0.2
2,808,705 + +1.0
2,808,705 + -0.7
2,808,705 + +0.6

Or see this region's nucleotide sequence