Strain Fitness in Escherichia coli BL21 around ECD_04193

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04192 and ECD_04193 are separated by 214 nucleotidesECD_04193 and ECD_04194 are separated by 140 nucleotides ECD_04192: ECD_04192 - D-mannonate oxidoreductase, NAD-dependent, at 4,462,180 to 4,463,640 _04192 ECD_04193: ECD_04193 - fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor, at 4,463,855 to 4,464,628 _04193 ECD_04194: ECD_04194 - uncharacterized protein, at 4,464,769 to 4,465,599 _04194 Position (kb) 4463 4464 4465Strain fitness (log2 ratio) -1 0 1 2at 4462.971 kb on + strand, within ECD_04192at 4462.972 kb on - strand, within ECD_04192at 4463.058 kb on + strand, within ECD_04192at 4463.277 kb on + strand, within ECD_04192at 4463.277 kb on + strand, within ECD_04192at 4463.277 kb on + strand, within ECD_04192at 4463.277 kb on + strand, within ECD_04192at 4463.405 kb on - strand, within ECD_04192at 4463.489 kb on - strand, within ECD_04192at 4463.590 kb on + strandat 4463.590 kb on + strandat 4463.591 kb on - strandat 4463.638 kb on + strandat 4463.683 kb on - strandat 4463.719 kb on + strandat 4463.748 kb on - strandat 4463.748 kb on - strandat 4463.748 kb on - strandat 4464.068 kb on + strand, within ECD_04193at 4464.068 kb on + strand, within ECD_04193at 4464.069 kb on - strand, within ECD_04193at 4464.882 kb on + strand, within ECD_04194at 4464.974 kb on - strand, within ECD_04194at 4465.108 kb on + strand, within ECD_04194

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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4,462,971 + ECD_04192 0.54 -0.5
4,462,972 - ECD_04192 0.54 -1.3
4,463,058 + ECD_04192 0.60 +1.0
4,463,277 + ECD_04192 0.75 +0.5
4,463,277 + ECD_04192 0.75 +0.1
4,463,277 + ECD_04192 0.75 -1.1
4,463,277 + ECD_04192 0.75 +0.3
4,463,405 - ECD_04192 0.84 +0.4
4,463,489 - ECD_04192 0.90 -0.3
4,463,590 + +0.7
4,463,590 + +0.4
4,463,591 - -0.8
4,463,638 + +0.7
4,463,683 - -0.4
4,463,719 + -0.9
4,463,748 - +1.9
4,463,748 - +0.1
4,463,748 - -1.2
4,464,068 + ECD_04193 0.28 -0.2
4,464,068 + ECD_04193 0.28 -0.5
4,464,069 - ECD_04193 0.28 -0.6
4,464,882 + ECD_04194 0.14 -0.1
4,464,974 - ECD_04194 0.25 +0.1
4,465,108 + ECD_04194 0.41 +0.6

Or see this region's nucleotide sequence