Strain Fitness in Escherichia coli BL21 around ECD_04070

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04067 and ECD_04068 are separated by 6 nucleotidesECD_04068 and ECD_04069 are separated by 4 nucleotidesECD_04069 and ECD_04070 are separated by 41 nucleotidesECD_04070 and ECD_04071 are separated by 101 nucleotides ECD_04067: ECD_04067 - 30S ribosomal subunit protein S6, at 4,331,638 to 4,332,033 _04067 ECD_04068: ECD_04068 - primosomal protein N, at 4,332,040 to 4,332,354 _04068 ECD_04069: ECD_04069 - 30S ribosomal subunit protein S18, at 4,332,359 to 4,332,586 _04069 ECD_04070: ECD_04070 - 50S ribosomal subunit protein L9, at 4,332,628 to 4,333,077 _04070 ECD_04071: ECD_04071 - Hexuronate transporter, at 4,333,179 to 4,334,456 _04071 Position (kb) 4332 4333 4334Strain fitness (log2 ratio) -1 0 1at 4332.626 kb on + strandat 4332.636 kb on + strandat 4332.636 kb on + strandat 4332.795 kb on + strand, within ECD_04070at 4332.822 kb on + strand, within ECD_04070at 4332.861 kb on + strand, within ECD_04070at 4332.861 kb on + strand, within ECD_04070at 4332.891 kb on + strand, within ECD_04070at 4332.891 kb on + strand, within ECD_04070at 4332.935 kb on + strand, within ECD_04070at 4333.097 kb on + strandat 4333.131 kb on - strandat 4333.131 kb on - strandat 4333.154 kb on - strandat 4333.156 kb on + strandat 4333.157 kb on - strandat 4333.157 kb on - strandat 4333.159 kb on - strandat 4333.170 kb on - strandat 4333.170 kb on - strandat 4333.173 kb on + strandat 4333.174 kb on - strandat 4333.174 kb on - strandat 4333.174 kb on - strandat 4333.197 kb on + strandat 4333.197 kb on + strandat 4333.384 kb on - strand, within ECD_04071at 4333.384 kb on - strand, within ECD_04071at 4333.425 kb on + strand, within ECD_04071at 4333.461 kb on - strand, within ECD_04071at 4333.499 kb on + strand, within ECD_04071at 4333.539 kb on - strand, within ECD_04071at 4333.547 kb on + strand, within ECD_04071at 4333.677 kb on - strand, within ECD_04071at 4333.817 kb on + strand, within ECD_04071at 4333.855 kb on + strand, within ECD_04071at 4333.973 kb on + strand, within ECD_04071at 4334.036 kb on + strand, within ECD_04071

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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4,332,626 + -0.4
4,332,636 + +0.4
4,332,636 + +0.0
4,332,795 + ECD_04070 0.37 +0.2
4,332,822 + ECD_04070 0.43 +0.8
4,332,861 + ECD_04070 0.52 +0.6
4,332,861 + ECD_04070 0.52 +0.1
4,332,891 + ECD_04070 0.58 -0.7
4,332,891 + ECD_04070 0.58 -0.2
4,332,935 + ECD_04070 0.68 -1.7
4,333,097 + +0.4
4,333,131 - -0.2
4,333,131 - +1.0
4,333,154 - -0.2
4,333,156 + -0.2
4,333,157 - -0.9
4,333,157 - +0.0
4,333,159 - -0.3
4,333,170 - -1.2
4,333,170 - +0.5
4,333,173 + +0.4
4,333,174 - +0.2
4,333,174 - -0.4
4,333,174 - -0.4
4,333,197 + +0.3
4,333,197 + -1.4
4,333,384 - ECD_04071 0.16 +1.0
4,333,384 - ECD_04071 0.16 -0.8
4,333,425 + ECD_04071 0.19 +0.7
4,333,461 - ECD_04071 0.22 +0.4
4,333,499 + ECD_04071 0.25 -1.1
4,333,539 - ECD_04071 0.28 +0.4
4,333,547 + ECD_04071 0.29 -0.1
4,333,677 - ECD_04071 0.39 +0.3
4,333,817 + ECD_04071 0.50 +0.2
4,333,855 + ECD_04071 0.53 +0.9
4,333,973 + ECD_04071 0.62 -0.7
4,334,036 + ECD_04071 0.67 -0.3

Or see this region's nucleotide sequence