Strain Fitness in Escherichia coli BL21 around ECD_04045

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04044 and ECD_04045 are separated by 204 nucleotidesECD_04045 and ECD_04046 are separated by 38 nucleotides ECD_04044: ECD_04044 - adenylosuccinate synthetase, at 4,311,207 to 4,312,505 _04044 ECD_04045: ECD_04045 - nitric oxide-sensitive repressor for NO regulon, at 4,312,710 to 4,313,135 _04045 ECD_04046: ECD_04046 - exoribonuclease R, RNase R, at 4,313,174 to 4,315,615 _04046 Position (kb) 4312 4313 4314Strain fitness (log2 ratio) -2 -1 0 1at 4312.504 kb on - strandat 4312.553 kb on + strandat 4312.553 kb on + strandat 4312.553 kb on + strandat 4312.553 kb on + strandat 4312.554 kb on - strandat 4312.578 kb on + strandat 4312.598 kb on + strandat 4312.671 kb on - strandat 4312.672 kb on + strandat 4312.672 kb on + strandat 4312.672 kb on + strandat 4312.673 kb on - strandat 4312.755 kb on + strand, within ECD_04045at 4312.755 kb on + strand, within ECD_04045at 4312.832 kb on + strand, within ECD_04045at 4312.833 kb on - strand, within ECD_04045at 4312.913 kb on + strand, within ECD_04045at 4312.935 kb on - strand, within ECD_04045at 4312.935 kb on - strand, within ECD_04045at 4312.935 kb on - strand, within ECD_04045at 4313.003 kb on + strand, within ECD_04045at 4313.004 kb on - strand, within ECD_04045at 4313.058 kb on - strand, within ECD_04045at 4313.114 kb on + strandat 4313.115 kb on - strandat 4313.213 kb on + strandat 4313.400 kb on - strandat 4313.400 kb on - strandat 4313.485 kb on + strand, within ECD_04046at 4313.486 kb on - strand, within ECD_04046at 4313.498 kb on + strand, within ECD_04046at 4313.499 kb on - strand, within ECD_04046at 4313.594 kb on - strand, within ECD_04046at 4313.640 kb on - strand, within ECD_04046at 4313.751 kb on + strand, within ECD_04046at 4313.876 kb on + strand, within ECD_04046at 4314.023 kb on + strand, within ECD_04046at 4314.057 kb on + strand, within ECD_04046at 4314.058 kb on - strand, within ECD_04046at 4314.083 kb on + strand, within ECD_04046at 4314.083 kb on + strand, within ECD_04046at 4314.084 kb on - strand, within ECD_04046at 4314.086 kb on + strand, within ECD_04046at 4314.086 kb on + strand, within ECD_04046at 4314.087 kb on - strand, within ECD_04046at 4314.087 kb on - strand, within ECD_04046at 4314.087 kb on - strand, within ECD_04046at 4314.087 kb on - strand, within ECD_04046at 4314.087 kb on - strand, within ECD_04046at 4314.087 kb on - strand, within ECD_04046

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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4,312,504 - +1.0
4,312,553 + -1.1
4,312,553 + +0.6
4,312,553 + +0.0
4,312,553 + +0.4
4,312,554 - -0.2
4,312,578 + -0.0
4,312,598 + +0.9
4,312,671 - -0.7
4,312,672 + +0.1
4,312,672 + +0.1
4,312,672 + +0.2
4,312,673 - -0.4
4,312,755 + ECD_04045 0.11 -0.2
4,312,755 + ECD_04045 0.11 -0.4
4,312,832 + ECD_04045 0.29 -0.5
4,312,833 - ECD_04045 0.29 -1.0
4,312,913 + ECD_04045 0.48 -0.6
4,312,935 - ECD_04045 0.53 -0.8
4,312,935 - ECD_04045 0.53 -1.7
4,312,935 - ECD_04045 0.53 -1.2
4,313,003 + ECD_04045 0.69 -1.3
4,313,004 - ECD_04045 0.69 -0.3
4,313,058 - ECD_04045 0.82 +0.2
4,313,114 + +0.3
4,313,115 - -0.5
4,313,213 + +0.5
4,313,400 - -0.6
4,313,400 - +0.2
4,313,485 + ECD_04046 0.13 -0.6
4,313,486 - ECD_04046 0.13 -0.2
4,313,498 + ECD_04046 0.13 +0.2
4,313,499 - ECD_04046 0.13 +0.1
4,313,594 - ECD_04046 0.17 -0.8
4,313,640 - ECD_04046 0.19 -0.3
4,313,751 + ECD_04046 0.24 -0.9
4,313,876 + ECD_04046 0.29 -0.7
4,314,023 + ECD_04046 0.35 -0.1
4,314,057 + ECD_04046 0.36 -0.7
4,314,058 - ECD_04046 0.36 -0.2
4,314,083 + ECD_04046 0.37 +0.2
4,314,083 + ECD_04046 0.37 -0.1
4,314,084 - ECD_04046 0.37 +0.3
4,314,086 + ECD_04046 0.37 -0.3
4,314,086 + ECD_04046 0.37 -1.0
4,314,087 - ECD_04046 0.37 -0.2
4,314,087 - ECD_04046 0.37 -1.3
4,314,087 - ECD_04046 0.37 -1.1
4,314,087 - ECD_04046 0.37 -0.2
4,314,087 - ECD_04046 0.37 -2.6
4,314,087 - ECD_04046 0.37 +0.3

Or see this region's nucleotide sequence