Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04026 and ECD_04027 are separated by 324 nucleotides ECD_04027 and ECD_04028 are separated by 218 nucleotides
ECD_04026: ECD_04026 - anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit, at 4,287,586 to 4,289,394
_04026
ECD_04027: ECD_04027 - Elongation Factor P Lys34 lysyltransferase, at 4,289,719 to 4,290,696
_04027
ECD_04028: ECD_04028 - putative transporter, at 4,290,915 to 4,292,417
_04028
Position (kb)
4289
4290
4291 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4288.749 kb on + strand, within ECD_04026 at 4288.790 kb on + strand, within ECD_04026 at 4288.989 kb on + strand, within ECD_04026 at 4288.989 kb on + strand, within ECD_04026 at 4288.989 kb on + strand, within ECD_04026 at 4288.990 kb on - strand, within ECD_04026 at 4289.005 kb on - strand, within ECD_04026 at 4289.022 kb on + strand, within ECD_04026 at 4289.265 kb on + strand at 4289.265 kb on + strand at 4289.290 kb on + strand at 4289.291 kb on - strand at 4289.341 kb on + strand at 4289.363 kb on - strand at 4289.442 kb on - strand at 4289.442 kb on - strand at 4289.473 kb on - strand at 4289.489 kb on - strand at 4289.490 kb on + strand at 4289.491 kb on - strand at 4289.494 kb on + strand at 4289.494 kb on + strand at 4289.495 kb on - strand at 4289.502 kb on + strand at 4289.502 kb on + strand at 4289.503 kb on - strand at 4289.504 kb on + strand at 4289.505 kb on - strand at 4289.505 kb on - strand at 4289.569 kb on - strand at 4289.569 kb on - strand at 4289.589 kb on + strand at 4289.597 kb on - strand at 4289.682 kb on - strand at 4290.828 kb on + strand at 4290.888 kb on - strand at 4290.956 kb on - strand at 4291.197 kb on + strand, within ECD_04028 at 4291.197 kb on + strand, within ECD_04028 at 4291.199 kb on + strand, within ECD_04028 at 4291.217 kb on + strand, within ECD_04028 at 4291.218 kb on - strand, within ECD_04028 at 4291.257 kb on + strand, within ECD_04028 at 4291.304 kb on + strand, within ECD_04028
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 4,288,749 + ECD_04026 0.64 +0.5 4,288,790 + ECD_04026 0.67 +0.1 4,288,989 + ECD_04026 0.78 -1.4 4,288,989 + ECD_04026 0.78 -0.9 4,288,989 + ECD_04026 0.78 +0.1 4,288,990 - ECD_04026 0.78 -0.2 4,289,005 - ECD_04026 0.78 -0.6 4,289,022 + ECD_04026 0.79 -0.3 4,289,265 + -0.4 4,289,265 + +0.6 4,289,290 + -2.1 4,289,291 - -0.3 4,289,341 + +0.0 4,289,363 - -0.4 4,289,442 - +0.0 4,289,442 - +0.7 4,289,473 - -0.3 4,289,489 - -1.2 4,289,490 + +0.7 4,289,491 - -0.0 4,289,494 + +0.9 4,289,494 + +0.2 4,289,495 - +0.5 4,289,502 + -0.7 4,289,502 + +0.3 4,289,503 - +0.5 4,289,504 + +1.2 4,289,505 - -0.1 4,289,505 - +0.6 4,289,569 - -0.2 4,289,569 - -2.0 4,289,589 + -0.2 4,289,597 - -0.1 4,289,682 - -0.3 4,290,828 + +0.1 4,290,888 - +0.5 4,290,956 - +1.8 4,291,197 + ECD_04028 0.19 +0.5 4,291,197 + ECD_04028 0.19 -0.3 4,291,199 + ECD_04028 0.19 -0.4 4,291,217 + ECD_04028 0.20 +0.6 4,291,218 - ECD_04028 0.20 +0.6 4,291,257 + ECD_04028 0.23 -0.1 4,291,304 + ECD_04028 0.26 -0.1
Or see this region's nucleotide sequence