Strain Fitness in Escherichia coli BL21 around ECD_03897

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03896 and ECD_03897 are separated by 524 nucleotidesECD_03897 and ECD_03898 are separated by 498 nucleotidesECD_03898 and ECD_03899 are separated by 114 nucleotides ECD_03896: ECD_03896 - lysine-sensitive aspartokinase 3, at 4,139,255 to 4,140,604 _03896 ECD_03897: ECD_03897 - glucosephosphate isomerase, at 4,141,129 to 4,142,778 _03897 ECD_03898: ECD_03898 - extracellular polysaccharide production threonine-rich protein, at 4,143,277 to 4,143,519 _03898 ECD_03899: ECD_03899 - extracellular polysaccharide production lipoprotein, at 4,143,634 to 4,144,272 _03899 Position (kb) 4141 4142 4143Strain fitness (log2 ratio) -2 -1 0 1 2at 4140.131 kb on - strand, within ECD_03896at 4140.176 kb on - strand, within ECD_03896at 4140.176 kb on - strand, within ECD_03896at 4140.176 kb on - strand, within ECD_03896at 4140.179 kb on + strand, within ECD_03896at 4140.180 kb on - strand, within ECD_03896at 4140.320 kb on - strand, within ECD_03896at 4140.453 kb on - strand, within ECD_03896at 4140.469 kb on + strand, within ECD_03896at 4140.475 kb on + strandat 4140.476 kb on - strandat 4140.500 kb on + strandat 4140.500 kb on + strandat 4140.501 kb on - strandat 4140.501 kb on - strandat 4140.501 kb on - strandat 4140.529 kb on + strandat 4140.563 kb on + strandat 4140.563 kb on + strandat 4140.564 kb on - strandat 4140.564 kb on - strandat 4140.564 kb on - strandat 4140.604 kb on + strandat 4140.604 kb on + strandat 4140.604 kb on + strandat 4140.604 kb on + strandat 4140.604 kb on + strandat 4140.604 kb on + strandat 4140.604 kb on + strandat 4140.604 kb on + strandat 4140.604 kb on + strandat 4140.604 kb on + strandat 4140.605 kb on - strandat 4140.605 kb on - strandat 4140.605 kb on - strandat 4140.608 kb on + strandat 4140.608 kb on + strandat 4140.608 kb on + strandat 4140.609 kb on - strandat 4140.609 kb on - strandat 4140.609 kb on - strandat 4140.609 kb on - strandat 4140.681 kb on - strandat 4140.836 kb on - strandat 4140.836 kb on - strandat 4140.836 kb on - strandat 4140.864 kb on + strandat 4140.865 kb on - strandat 4140.865 kb on - strandat 4140.906 kb on - strandat 4140.909 kb on - strandat 4140.909 kb on - strandat 4140.909 kb on - strandat 4140.909 kb on - strandat 4140.909 kb on - strandat 4140.909 kb on - strandat 4140.909 kb on - strandat 4140.909 kb on - strandat 4140.909 kb on - strandat 4140.909 kb on - strandat 4140.989 kb on - strandat 4141.000 kb on + strandat 4141.001 kb on - strandat 4141.025 kb on + strandat 4141.121 kb on + strandat 4141.121 kb on + strandat 4141.446 kb on + strand, within ECD_03897at 4141.475 kb on + strand, within ECD_03897at 4141.475 kb on + strand, within ECD_03897at 4141.554 kb on + strand, within ECD_03897at 4141.615 kb on + strand, within ECD_03897at 4141.615 kb on + strand, within ECD_03897at 4141.615 kb on + strand, within ECD_03897at 4141.615 kb on + strand, within ECD_03897at 4141.616 kb on - strand, within ECD_03897at 4141.742 kb on + strand, within ECD_03897at 4141.939 kb on + strand, within ECD_03897at 4142.073 kb on - strand, within ECD_03897at 4142.140 kb on + strand, within ECD_03897at 4142.140 kb on + strand, within ECD_03897at 4142.150 kb on - strand, within ECD_03897at 4142.151 kb on + strand, within ECD_03897at 4142.151 kb on + strand, within ECD_03897at 4142.151 kb on + strand, within ECD_03897at 4142.152 kb on - strand, within ECD_03897at 4142.152 kb on - strand, within ECD_03897at 4142.206 kb on + strand, within ECD_03897at 4142.207 kb on - strand, within ECD_03897at 4142.207 kb on - strand, within ECD_03897at 4142.207 kb on - strand, within ECD_03897at 4142.275 kb on - strand, within ECD_03897at 4142.294 kb on - strand, within ECD_03897at 4142.495 kb on - strand, within ECD_03897at 4142.789 kb on + strandat 4142.790 kb on - strandat 4142.858 kb on - strandat 4142.867 kb on - strandat 4142.883 kb on - strandat 4142.883 kb on - strandat 4142.883 kb on - strandat 4142.886 kb on + strandat 4142.886 kb on + strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.907 kb on + strandat 4142.908 kb on - strandat 4142.908 kb on - strandat 4143.425 kb on + strand, within ECD_03898at 4143.426 kb on - strand, within ECD_03898at 4143.477 kb on + strand, within ECD_03898at 4143.511 kb on - strandat 4143.520 kb on + strandat 4143.521 kb on - strandat 4143.525 kb on + strandat 4143.525 kb on + strandat 4143.525 kb on + strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.529 kb on + strandat 4143.530 kb on - strandat 4143.571 kb on + strandat 4143.771 kb on + strand, within ECD_03899

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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4,140,131 - ECD_03896 0.65 -0.4
4,140,176 - ECD_03896 0.68 -1.0
4,140,176 - ECD_03896 0.68 -2.0
4,140,176 - ECD_03896 0.68 +0.6
4,140,179 + ECD_03896 0.68 -0.2
4,140,180 - ECD_03896 0.69 +0.5
4,140,320 - ECD_03896 0.79 +0.6
4,140,453 - ECD_03896 0.89 +0.4
4,140,469 + ECD_03896 0.90 +0.1
4,140,475 + -0.1
4,140,476 - +0.0
4,140,500 + +0.0
4,140,500 + -0.7
4,140,501 - -0.3
4,140,501 - +0.2
4,140,501 - -0.3
4,140,529 + +0.4
4,140,563 + -0.3
4,140,563 + -1.1
4,140,564 - +0.1
4,140,564 - -0.8
4,140,564 - -0.4
4,140,604 + -0.1
4,140,604 + -0.3
4,140,604 + +0.5
4,140,604 + +0.2
4,140,604 + -0.5
4,140,604 + -0.7
4,140,604 + +1.1
4,140,604 + +0.1
4,140,604 + +0.2
4,140,604 + -1.4
4,140,605 - -0.2
4,140,605 - +0.4
4,140,605 - -0.4
4,140,608 + +0.1
4,140,608 + +1.2
4,140,608 + +0.0
4,140,609 - +0.0
4,140,609 - +0.2
4,140,609 - +0.4
4,140,609 - -1.6
4,140,681 - +0.2
4,140,836 - +0.0
4,140,836 - -0.6
4,140,836 - +0.4
4,140,864 + +0.5
4,140,865 - -0.1
4,140,865 - +0.8
4,140,906 - -0.1
4,140,909 - -0.2
4,140,909 - +0.7
4,140,909 - +0.0
4,140,909 - -0.2
4,140,909 - +0.3
4,140,909 - +0.5
4,140,909 - +0.2
4,140,909 - -0.8
4,140,909 - -0.6
4,140,909 - -0.3
4,140,989 - -0.3
4,141,000 + +1.2
4,141,001 - +0.3
4,141,025 + -1.1
4,141,121 + -0.1
4,141,121 + -0.8
4,141,446 + ECD_03897 0.19 -0.1
4,141,475 + ECD_03897 0.21 +0.1
4,141,475 + ECD_03897 0.21 +1.0
4,141,554 + ECD_03897 0.26 -1.3
4,141,615 + ECD_03897 0.29 -0.6
4,141,615 + ECD_03897 0.29 +0.4
4,141,615 + ECD_03897 0.29 +0.0
4,141,615 + ECD_03897 0.29 -1.4
4,141,616 - ECD_03897 0.30 -0.2
4,141,742 + ECD_03897 0.37 -0.4
4,141,939 + ECD_03897 0.49 -0.1
4,142,073 - ECD_03897 0.57 +2.1
4,142,140 + ECD_03897 0.61 +1.1
4,142,140 + ECD_03897 0.61 +0.8
4,142,150 - ECD_03897 0.62 +1.2
4,142,151 + ECD_03897 0.62 +0.2
4,142,151 + ECD_03897 0.62 -0.9
4,142,151 + ECD_03897 0.62 -0.5
4,142,152 - ECD_03897 0.62 -0.4
4,142,152 - ECD_03897 0.62 -1.4
4,142,206 + ECD_03897 0.65 -0.7
4,142,207 - ECD_03897 0.65 -0.9
4,142,207 - ECD_03897 0.65 -0.4
4,142,207 - ECD_03897 0.65 -0.5
4,142,275 - ECD_03897 0.69 -1.6
4,142,294 - ECD_03897 0.71 +0.4
4,142,495 - ECD_03897 0.83 +0.8
4,142,789 + -0.1
4,142,790 - -0.3
4,142,858 - +0.4
4,142,867 - -0.5
4,142,883 - +1.7
4,142,883 - -0.3
4,142,883 - -0.0
4,142,886 + -1.5
4,142,886 + +0.1
4,142,887 - -0.2
4,142,887 - +1.7
4,142,887 - -1.4
4,142,887 - -0.0
4,142,887 - +0.1
4,142,887 - +0.2
4,142,907 + -0.3
4,142,908 - +1.0
4,142,908 - +0.0
4,143,425 + ECD_03898 0.61 +0.0
4,143,426 - ECD_03898 0.61 -1.0
4,143,477 + ECD_03898 0.82 -1.5
4,143,511 - -2.3
4,143,520 + -0.0
4,143,521 - +0.1
4,143,525 + +0.4
4,143,525 + -0.1
4,143,525 + -1.9
4,143,526 - -1.3
4,143,526 - +0.1
4,143,526 - +0.5
4,143,526 - -1.1
4,143,526 - +0.3
4,143,529 + +0.6
4,143,530 - +0.9
4,143,571 + -0.6
4,143,771 + ECD_03899 0.21 +0.7

Or see this region's nucleotide sequence