Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03896 and ECD_03897 are separated by 524 nucleotides ECD_03897 and ECD_03898 are separated by 498 nucleotides ECD_03898 and ECD_03899 are separated by 114 nucleotides
ECD_03896: ECD_03896 - lysine-sensitive aspartokinase 3, at 4,139,255 to 4,140,604
_03896
ECD_03897: ECD_03897 - glucosephosphate isomerase, at 4,141,129 to 4,142,778
_03897
ECD_03898: ECD_03898 - extracellular polysaccharide production threonine-rich protein, at 4,143,277 to 4,143,519
_03898
ECD_03899: ECD_03899 - extracellular polysaccharide production lipoprotein, at 4,143,634 to 4,144,272
_03899
Position (kb)
4141
4142
4143 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4140.131 kb on - strand, within ECD_03896 at 4140.176 kb on - strand, within ECD_03896 at 4140.176 kb on - strand, within ECD_03896 at 4140.176 kb on - strand, within ECD_03896 at 4140.179 kb on + strand, within ECD_03896 at 4140.180 kb on - strand, within ECD_03896 at 4140.320 kb on - strand, within ECD_03896 at 4140.453 kb on - strand, within ECD_03896 at 4140.469 kb on + strand, within ECD_03896 at 4140.475 kb on + strand at 4140.476 kb on - strand at 4140.500 kb on + strand at 4140.500 kb on + strand at 4140.501 kb on - strand at 4140.501 kb on - strand at 4140.501 kb on - strand at 4140.529 kb on + strand at 4140.563 kb on + strand at 4140.563 kb on + strand at 4140.564 kb on - strand at 4140.564 kb on - strand at 4140.564 kb on - strand at 4140.604 kb on + strand at 4140.604 kb on + strand at 4140.604 kb on + strand at 4140.604 kb on + strand at 4140.604 kb on + strand at 4140.604 kb on + strand at 4140.604 kb on + strand at 4140.604 kb on + strand at 4140.604 kb on + strand at 4140.604 kb on + strand at 4140.605 kb on - strand at 4140.605 kb on - strand at 4140.605 kb on - strand at 4140.608 kb on + strand at 4140.608 kb on + strand at 4140.608 kb on + strand at 4140.609 kb on - strand at 4140.609 kb on - strand at 4140.609 kb on - strand at 4140.609 kb on - strand at 4140.681 kb on - strand at 4140.836 kb on - strand at 4140.836 kb on - strand at 4140.836 kb on - strand at 4140.864 kb on + strand at 4140.865 kb on - strand at 4140.865 kb on - strand at 4140.906 kb on - strand at 4140.909 kb on - strand at 4140.909 kb on - strand at 4140.909 kb on - strand at 4140.909 kb on - strand at 4140.909 kb on - strand at 4140.909 kb on - strand at 4140.909 kb on - strand at 4140.909 kb on - strand at 4140.909 kb on - strand at 4140.909 kb on - strand at 4140.989 kb on - strand at 4141.000 kb on + strand at 4141.001 kb on - strand at 4141.025 kb on + strand at 4141.121 kb on + strand at 4141.121 kb on + strand at 4141.446 kb on + strand, within ECD_03897 at 4141.475 kb on + strand, within ECD_03897 at 4141.475 kb on + strand, within ECD_03897 at 4141.554 kb on + strand, within ECD_03897 at 4141.615 kb on + strand, within ECD_03897 at 4141.615 kb on + strand, within ECD_03897 at 4141.615 kb on + strand, within ECD_03897 at 4141.615 kb on + strand, within ECD_03897 at 4141.616 kb on - strand, within ECD_03897 at 4141.742 kb on + strand, within ECD_03897 at 4141.939 kb on + strand, within ECD_03897 at 4142.073 kb on - strand, within ECD_03897 at 4142.140 kb on + strand, within ECD_03897 at 4142.140 kb on + strand, within ECD_03897 at 4142.150 kb on - strand, within ECD_03897 at 4142.151 kb on + strand, within ECD_03897 at 4142.151 kb on + strand, within ECD_03897 at 4142.151 kb on + strand, within ECD_03897 at 4142.152 kb on - strand, within ECD_03897 at 4142.152 kb on - strand, within ECD_03897 at 4142.206 kb on + strand, within ECD_03897 at 4142.207 kb on - strand, within ECD_03897 at 4142.207 kb on - strand, within ECD_03897 at 4142.207 kb on - strand, within ECD_03897 at 4142.275 kb on - strand, within ECD_03897 at 4142.294 kb on - strand, within ECD_03897 at 4142.495 kb on - strand, within ECD_03897 at 4142.789 kb on + strand at 4142.790 kb on - strand at 4142.858 kb on - strand at 4142.867 kb on - strand at 4142.883 kb on - strand at 4142.883 kb on - strand at 4142.883 kb on - strand at 4142.886 kb on + strand at 4142.886 kb on + strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.907 kb on + strand at 4142.908 kb on - strand at 4142.908 kb on - strand at 4143.425 kb on + strand, within ECD_03898 at 4143.426 kb on - strand, within ECD_03898 at 4143.477 kb on + strand, within ECD_03898 at 4143.511 kb on - strand at 4143.520 kb on + strand at 4143.521 kb on - strand at 4143.525 kb on + strand at 4143.525 kb on + strand at 4143.525 kb on + strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.529 kb on + strand at 4143.530 kb on - strand at 4143.571 kb on + strand at 4143.771 kb on + strand, within ECD_03899
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 4,140,131 - ECD_03896 0.65 -0.4 4,140,176 - ECD_03896 0.68 -1.0 4,140,176 - ECD_03896 0.68 -2.0 4,140,176 - ECD_03896 0.68 +0.6 4,140,179 + ECD_03896 0.68 -0.2 4,140,180 - ECD_03896 0.69 +0.5 4,140,320 - ECD_03896 0.79 +0.6 4,140,453 - ECD_03896 0.89 +0.4 4,140,469 + ECD_03896 0.90 +0.1 4,140,475 + -0.1 4,140,476 - +0.0 4,140,500 + +0.0 4,140,500 + -0.7 4,140,501 - -0.3 4,140,501 - +0.2 4,140,501 - -0.3 4,140,529 + +0.4 4,140,563 + -0.3 4,140,563 + -1.1 4,140,564 - +0.1 4,140,564 - -0.8 4,140,564 - -0.4 4,140,604 + -0.1 4,140,604 + -0.3 4,140,604 + +0.5 4,140,604 + +0.2 4,140,604 + -0.5 4,140,604 + -0.7 4,140,604 + +1.1 4,140,604 + +0.1 4,140,604 + +0.2 4,140,604 + -1.4 4,140,605 - -0.2 4,140,605 - +0.4 4,140,605 - -0.4 4,140,608 + +0.1 4,140,608 + +1.2 4,140,608 + +0.0 4,140,609 - +0.0 4,140,609 - +0.2 4,140,609 - +0.4 4,140,609 - -1.6 4,140,681 - +0.2 4,140,836 - +0.0 4,140,836 - -0.6 4,140,836 - +0.4 4,140,864 + +0.5 4,140,865 - -0.1 4,140,865 - +0.8 4,140,906 - -0.1 4,140,909 - -0.2 4,140,909 - +0.7 4,140,909 - +0.0 4,140,909 - -0.2 4,140,909 - +0.3 4,140,909 - +0.5 4,140,909 - +0.2 4,140,909 - -0.8 4,140,909 - -0.6 4,140,909 - -0.3 4,140,989 - -0.3 4,141,000 + +1.2 4,141,001 - +0.3 4,141,025 + -1.1 4,141,121 + -0.1 4,141,121 + -0.8 4,141,446 + ECD_03897 0.19 -0.1 4,141,475 + ECD_03897 0.21 +0.1 4,141,475 + ECD_03897 0.21 +1.0 4,141,554 + ECD_03897 0.26 -1.3 4,141,615 + ECD_03897 0.29 -0.6 4,141,615 + ECD_03897 0.29 +0.4 4,141,615 + ECD_03897 0.29 +0.0 4,141,615 + ECD_03897 0.29 -1.4 4,141,616 - ECD_03897 0.30 -0.2 4,141,742 + ECD_03897 0.37 -0.4 4,141,939 + ECD_03897 0.49 -0.1 4,142,073 - ECD_03897 0.57 +2.1 4,142,140 + ECD_03897 0.61 +1.1 4,142,140 + ECD_03897 0.61 +0.8 4,142,150 - ECD_03897 0.62 +1.2 4,142,151 + ECD_03897 0.62 +0.2 4,142,151 + ECD_03897 0.62 -0.9 4,142,151 + ECD_03897 0.62 -0.5 4,142,152 - ECD_03897 0.62 -0.4 4,142,152 - ECD_03897 0.62 -1.4 4,142,206 + ECD_03897 0.65 -0.7 4,142,207 - ECD_03897 0.65 -0.9 4,142,207 - ECD_03897 0.65 -0.4 4,142,207 - ECD_03897 0.65 -0.5 4,142,275 - ECD_03897 0.69 -1.6 4,142,294 - ECD_03897 0.71 +0.4 4,142,495 - ECD_03897 0.83 +0.8 4,142,789 + -0.1 4,142,790 - -0.3 4,142,858 - +0.4 4,142,867 - -0.5 4,142,883 - +1.7 4,142,883 - -0.3 4,142,883 - -0.0 4,142,886 + -1.5 4,142,886 + +0.1 4,142,887 - -0.2 4,142,887 - +1.7 4,142,887 - -1.4 4,142,887 - -0.0 4,142,887 - +0.1 4,142,887 - +0.2 4,142,907 + -0.3 4,142,908 - +1.0 4,142,908 - +0.0 4,143,425 + ECD_03898 0.61 +0.0 4,143,426 - ECD_03898 0.61 -1.0 4,143,477 + ECD_03898 0.82 -1.5 4,143,511 - -2.3 4,143,520 + -0.0 4,143,521 - +0.1 4,143,525 + +0.4 4,143,525 + -0.1 4,143,525 + -1.9 4,143,526 - -1.3 4,143,526 - +0.1 4,143,526 - +0.5 4,143,526 - -1.1 4,143,526 - +0.3 4,143,529 + +0.6 4,143,530 - +0.9 4,143,571 + -0.6 4,143,771 + ECD_03899 0.21 +0.7
Or see this region's nucleotide sequence