Strain Fitness in Escherichia coli BL21 around ECD_03817

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03816 and ECD_03817 are separated by 9 nucleotidesECD_03817 and ECD_03818 are separated by 92 nucleotides ECD_03816: ECD_03816 - molecular chaperone and ATPase component of HslUV protease, at 4,028,339 to 4,029,670 _03816 ECD_03817: ECD_03817 - peptidase component of the HslUV protease, at 4,029,680 to 4,030,210 _03817 ECD_03818: ECD_03818 - essential cell division protein, at 4,030,303 to 4,031,262 _03818 Position (kb) 4029 4030 4031Strain fitness (log2 ratio) -3 -2 -1 0 1at 4028.817 kb on - strand, within ECD_03816at 4029.253 kb on + strand, within ECD_03816at 4029.253 kb on + strand, within ECD_03816at 4029.254 kb on - strand, within ECD_03816at 4029.281 kb on - strand, within ECD_03816at 4029.696 kb on - strandat 4029.725 kb on - strandat 4029.727 kb on - strandat 4029.850 kb on + strand, within ECD_03817at 4029.850 kb on + strand, within ECD_03817at 4029.851 kb on - strand, within ECD_03817at 4030.096 kb on - strand, within ECD_03817at 4030.136 kb on - strand, within ECD_03817at 4030.197 kb on - strandat 4030.197 kb on - strandat 4030.197 kb on - strandat 4030.197 kb on - strandat 4030.197 kb on - strandat 4030.201 kb on + strandat 4030.201 kb on + strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.202 kb on - strandat 4030.228 kb on - strandat 4030.241 kb on - strandat 4030.269 kb on - strandat 4030.278 kb on - strandat 4030.278 kb on - strandat 4030.280 kb on - strandat 4030.280 kb on - strandat 4030.280 kb on - strandat 4030.280 kb on - strandat 4030.280 kb on - strandat 4030.336 kb on - strandat 4030.336 kb on - strandat 4030.336 kb on - strandat 4030.472 kb on - strand, within ECD_03818at 4030.472 kb on - strand, within ECD_03818at 4030.711 kb on - strand, within ECD_03818at 4030.711 kb on - strand, within ECD_03818at 4030.777 kb on + strand, within ECD_03818

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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4,028,817 - ECD_03816 0.36 +0.2
4,029,253 + ECD_03816 0.69 +1.3
4,029,253 + ECD_03816 0.69 +1.4
4,029,254 - ECD_03816 0.69 -0.2
4,029,281 - ECD_03816 0.71 -1.1
4,029,696 - -2.0
4,029,725 - -1.9
4,029,727 - -1.7
4,029,850 + ECD_03817 0.32 -1.5
4,029,850 + ECD_03817 0.32 -0.9
4,029,851 - ECD_03817 0.32 +0.3
4,030,096 - ECD_03817 0.78 -0.6
4,030,136 - ECD_03817 0.86 -0.4
4,030,197 - +1.3
4,030,197 - +0.0
4,030,197 - +0.1
4,030,197 - -0.3
4,030,197 - -1.9
4,030,201 + -1.5
4,030,201 + -0.4
4,030,202 - -0.3
4,030,202 - -1.0
4,030,202 - +1.3
4,030,202 - -0.7
4,030,202 - -3.1
4,030,202 - +0.5
4,030,202 - -0.3
4,030,202 - -1.6
4,030,202 - -0.4
4,030,228 - -0.6
4,030,241 - +0.3
4,030,269 - +0.9
4,030,278 - -0.0
4,030,278 - -0.2
4,030,280 - +0.9
4,030,280 - +0.6
4,030,280 - +0.5
4,030,280 - +0.9
4,030,280 - -0.1
4,030,336 - -0.3
4,030,336 - +0.3
4,030,336 - +0.8
4,030,472 - ECD_03818 0.18 +0.6
4,030,472 - ECD_03818 0.18 -1.6
4,030,711 - ECD_03818 0.42 -0.2
4,030,711 - ECD_03818 0.42 -1.4
4,030,777 + ECD_03818 0.49 +0.6

Or see this region's nucleotide sequence