Strain Fitness in Escherichia coli BL21 around ECD_03735

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03734 and ECD_03735 are separated by 45 nucleotidesECD_03735 and ECD_03736 are separated by 282 nucleotides ECD_03734: ECD_03734 - 3-octaprenyl-4-hydroxybenzoate decarboxylase, at 3,931,899 to 3,933,392 _03734 ECD_03735: ECD_03735 - NAD(P)H-flavin reductase, at 3,933,438 to 3,934,139 _03735 ECD_03736: ECD_03736 - 3-ketoacyl-CoA thiolase (thiolase I), at 3,934,422 to 3,935,585 _03736 Position (kb) 3933 3934 3935Strain fitness (log2 ratio) -3 -2 -1 0 1at 3933.371 kb on + strandat 3933.371 kb on + strandat 3933.380 kb on + strandat 3933.381 kb on - strandat 3933.381 kb on - strandat 3933.412 kb on - strandat 3933.416 kb on - strandat 3933.448 kb on + strandat 3933.449 kb on - strandat 3933.449 kb on - strandat 3933.449 kb on - strandat 3933.490 kb on + strandat 3933.490 kb on + strandat 3933.491 kb on - strandat 3933.491 kb on - strandat 3933.493 kb on - strandat 3933.543 kb on + strand, within ECD_03735at 3933.629 kb on + strand, within ECD_03735at 3933.630 kb on - strand, within ECD_03735at 3933.836 kb on + strand, within ECD_03735at 3933.876 kb on + strand, within ECD_03735at 3933.877 kb on - strand, within ECD_03735at 3933.877 kb on - strand, within ECD_03735at 3934.028 kb on + strand, within ECD_03735at 3934.028 kb on + strand, within ECD_03735at 3934.028 kb on + strand, within ECD_03735at 3934.028 kb on + strand, within ECD_03735at 3934.028 kb on + strand, within ECD_03735at 3934.029 kb on - strand, within ECD_03735at 3934.029 kb on - strand, within ECD_03735at 3934.032 kb on + strand, within ECD_03735at 3934.032 kb on + strand, within ECD_03735at 3934.032 kb on + strand, within ECD_03735at 3934.033 kb on - strand, within ECD_03735at 3934.033 kb on - strand, within ECD_03735at 3934.033 kb on - strand, within ECD_03735at 3934.033 kb on - strand, within ECD_03735at 3934.035 kb on - strand, within ECD_03735at 3934.133 kb on + strandat 3934.144 kb on + strandat 3934.144 kb on + strandat 3934.191 kb on + strandat 3934.205 kb on + strandat 3934.211 kb on + strandat 3934.212 kb on - strandat 3934.212 kb on - strandat 3934.218 kb on + strandat 3934.219 kb on - strandat 3934.219 kb on - strandat 3934.257 kb on + strandat 3934.266 kb on + strandat 3934.267 kb on - strandat 3934.272 kb on + strandat 3934.272 kb on + strandat 3934.273 kb on - strandat 3934.356 kb on - strandat 3934.466 kb on + strandat 3934.467 kb on - strandat 3934.628 kb on + strand, within ECD_03736at 3934.631 kb on + strand, within ECD_03736at 3934.810 kb on - strand, within ECD_03736at 3934.810 kb on - strand, within ECD_03736at 3934.877 kb on + strand, within ECD_03736at 3934.878 kb on - strand, within ECD_03736at 3934.892 kb on + strand, within ECD_03736at 3935.118 kb on - strand, within ECD_03736at 3935.118 kb on - strand, within ECD_03736at 3935.118 kb on - strand, within ECD_03736

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,933,371 + -0.6
3,933,371 + +0.9
3,933,380 + -0.1
3,933,381 - -0.7
3,933,381 - -2.0
3,933,412 - +0.2
3,933,416 - +0.4
3,933,448 + +0.1
3,933,449 - +0.1
3,933,449 - -0.8
3,933,449 - -2.8
3,933,490 + -0.6
3,933,490 + +0.1
3,933,491 - -0.3
3,933,491 - -0.9
3,933,493 - +0.7
3,933,543 + ECD_03735 0.15 -0.8
3,933,629 + ECD_03735 0.27 -2.8
3,933,630 - ECD_03735 0.27 -0.6
3,933,836 + ECD_03735 0.57 +0.7
3,933,876 + ECD_03735 0.62 -1.0
3,933,877 - ECD_03735 0.63 +0.7
3,933,877 - ECD_03735 0.63 +0.6
3,934,028 + ECD_03735 0.84 -1.1
3,934,028 + ECD_03735 0.84 -1.5
3,934,028 + ECD_03735 0.84 -1.2
3,934,028 + ECD_03735 0.84 -1.8
3,934,028 + ECD_03735 0.84 -0.4
3,934,029 - ECD_03735 0.84 -1.1
3,934,029 - ECD_03735 0.84 -0.6
3,934,032 + ECD_03735 0.85 -0.5
3,934,032 + ECD_03735 0.85 -0.8
3,934,032 + ECD_03735 0.85 -2.0
3,934,033 - ECD_03735 0.85 -1.8
3,934,033 - ECD_03735 0.85 -0.8
3,934,033 - ECD_03735 0.85 +0.1
3,934,033 - ECD_03735 0.85 -0.1
3,934,035 - ECD_03735 0.85 -2.2
3,934,133 + -1.6
3,934,144 + +0.2
3,934,144 + -0.2
3,934,191 + +0.2
3,934,205 + -0.3
3,934,211 + +0.7
3,934,212 - -0.2
3,934,212 - +0.2
3,934,218 + +0.7
3,934,219 - +0.1
3,934,219 - -0.7
3,934,257 + -0.5
3,934,266 + +0.6
3,934,267 - +0.0
3,934,272 + +0.1
3,934,272 + +0.3
3,934,273 - +0.7
3,934,356 - +0.3
3,934,466 + -0.1
3,934,467 - -1.1
3,934,628 + ECD_03736 0.18 +0.0
3,934,631 + ECD_03736 0.18 -0.6
3,934,810 - ECD_03736 0.33 -1.4
3,934,810 - ECD_03736 0.33 +0.4
3,934,877 + ECD_03736 0.39 +1.0
3,934,878 - ECD_03736 0.39 -0.3
3,934,892 + ECD_03736 0.40 +0.1
3,935,118 - ECD_03736 0.60 -1.0
3,935,118 - ECD_03736 0.60 -1.0
3,935,118 - ECD_03736 0.60 +0.6

Or see this region's nucleotide sequence