Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03687 and ECD_03688 overlap by 1 nucleotides ECD_03688 and ECD_03689 are separated by 83 nucleotides ECD_03689 and ECD_03690 are separated by 54 nucleotides
ECD_03687: ECD_03687 - site-specific tyrosine recombinase, at 3,886,564 to 3,887,460
_03687
ECD_03688: ECD_03688 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis, at 3,887,460 to 3,888,176
_03688
ECD_03689: ECD_03689 - DNA-dependent ATPase I and helicase II, at 3,888,260 to 3,890,422
_03689
ECD_03690: ECD_03690 - hypothetical protein, at 3,890,477 to 3,891,379
_03690
Position (kb)
3888
3889
3890
3891 Strain fitness (log2 ratio)
-2
-1
0
1 at 3887.311 kb on - strand, within ECD_03687 at 3887.388 kb on + strand at 3887.389 kb on - strand at 3887.422 kb on + strand at 3887.459 kb on - strand at 3887.523 kb on + strand at 3887.523 kb on + strand at 3887.523 kb on + strand at 3887.523 kb on + strand at 3887.524 kb on - strand at 3887.567 kb on + strand, within ECD_03688 at 3887.824 kb on + strand, within ECD_03688 at 3887.825 kb on - strand, within ECD_03688 at 3887.905 kb on - strand, within ECD_03688 at 3887.960 kb on + strand, within ECD_03688 at 3887.964 kb on + strand, within ECD_03688 at 3887.964 kb on + strand, within ECD_03688 at 3887.965 kb on - strand, within ECD_03688 at 3887.965 kb on - strand, within ECD_03688 at 3887.965 kb on - strand, within ECD_03688 at 3888.010 kb on + strand, within ECD_03688 at 3888.010 kb on + strand, within ECD_03688 at 3888.010 kb on + strand, within ECD_03688 at 3888.010 kb on + strand, within ECD_03688 at 3888.011 kb on - strand, within ECD_03688 at 3888.172 kb on + strand at 3888.173 kb on - strand at 3888.189 kb on + strand at 3888.189 kb on + strand at 3888.189 kb on + strand at 3888.191 kb on + strand at 3888.191 kb on + strand at 3888.191 kb on + strand at 3888.193 kb on + strand at 3888.193 kb on + strand at 3888.193 kb on + strand at 3888.195 kb on + strand at 3888.239 kb on + strand at 3890.233 kb on + strand at 3890.268 kb on - strand at 3890.345 kb on - strand at 3890.400 kb on - strand at 3890.420 kb on + strand at 3890.420 kb on + strand at 3890.420 kb on + strand at 3890.421 kb on - strand at 3890.478 kb on + strand at 3890.478 kb on + strand at 3890.478 kb on + strand at 3890.479 kb on - strand at 3890.479 kb on - strand at 3890.479 kb on - strand at 3890.479 kb on - strand at 3890.512 kb on + strand at 3890.579 kb on + strand, within ECD_03690 at 3890.579 kb on + strand, within ECD_03690 at 3890.580 kb on - strand, within ECD_03690 at 3890.580 kb on - strand, within ECD_03690 at 3890.592 kb on + strand, within ECD_03690 at 3890.592 kb on + strand, within ECD_03690 at 3890.592 kb on + strand, within ECD_03690 at 3890.593 kb on - strand, within ECD_03690 at 3890.638 kb on - strand, within ECD_03690 at 3890.684 kb on + strand, within ECD_03690 at 3890.907 kb on + strand, within ECD_03690 at 3890.907 kb on + strand, within ECD_03690 at 3890.908 kb on - strand, within ECD_03690 at 3890.908 kb on - strand, within ECD_03690 at 3890.913 kb on + strand, within ECD_03690 at 3890.913 kb on + strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.915 kb on + strand, within ECD_03690 at 3890.915 kb on + strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.935 kb on + strand, within ECD_03690 at 3890.936 kb on - strand, within ECD_03690 at 3890.936 kb on - strand, within ECD_03690 at 3890.937 kb on + strand, within ECD_03690 at 3891.052 kb on - strand, within ECD_03690 at 3891.190 kb on - strand, within ECD_03690 at 3891.190 kb on - strand, within ECD_03690 at 3891.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,887,311 - ECD_03687 0.83 -1.1 3,887,388 + -0.5 3,887,389 - -0.1 3,887,422 + -2.5 3,887,459 - +0.6 3,887,523 + +0.2 3,887,523 + +0.7 3,887,523 + -0.3 3,887,523 + +1.1 3,887,524 - -0.5 3,887,567 + ECD_03688 0.15 +1.2 3,887,824 + ECD_03688 0.51 +0.4 3,887,825 - ECD_03688 0.51 +0.6 3,887,905 - ECD_03688 0.62 +0.2 3,887,960 + ECD_03688 0.70 +0.0 3,887,964 + ECD_03688 0.70 +0.8 3,887,964 + ECD_03688 0.70 +0.2 3,887,965 - ECD_03688 0.70 -0.4 3,887,965 - ECD_03688 0.70 +0.1 3,887,965 - ECD_03688 0.70 -0.4 3,888,010 + ECD_03688 0.77 +0.5 3,888,010 + ECD_03688 0.77 -0.0 3,888,010 + ECD_03688 0.77 -0.3 3,888,010 + ECD_03688 0.77 +0.1 3,888,011 - ECD_03688 0.77 -0.1 3,888,172 + +0.4 3,888,173 - -0.3 3,888,189 + -0.1 3,888,189 + -0.2 3,888,189 + -0.7 3,888,191 + -0.1 3,888,191 + -0.1 3,888,191 + -0.1 3,888,193 + +0.6 3,888,193 + +1.1 3,888,193 + +0.1 3,888,195 + -0.7 3,888,239 + +0.3 3,890,233 + -0.3 3,890,268 - -0.2 3,890,345 - -1.4 3,890,400 - -0.1 3,890,420 + +0.4 3,890,420 + +0.5 3,890,420 + +0.5 3,890,421 - -0.3 3,890,478 + +0.8 3,890,478 + -0.4 3,890,478 + +1.6 3,890,479 - +0.1 3,890,479 - +0.4 3,890,479 - -0.5 3,890,479 - +0.1 3,890,512 + +0.3 3,890,579 + ECD_03690 0.11 -0.1 3,890,579 + ECD_03690 0.11 -0.9 3,890,580 - ECD_03690 0.11 -0.3 3,890,580 - ECD_03690 0.11 -0.9 3,890,592 + ECD_03690 0.13 -1.7 3,890,592 + ECD_03690 0.13 +0.5 3,890,592 + ECD_03690 0.13 +0.3 3,890,593 - ECD_03690 0.13 +0.5 3,890,638 - ECD_03690 0.18 -0.1 3,890,684 + ECD_03690 0.23 -0.8 3,890,907 + ECD_03690 0.48 +0.6 3,890,907 + ECD_03690 0.48 -1.0 3,890,908 - ECD_03690 0.48 +1.0 3,890,908 - ECD_03690 0.48 -0.5 3,890,913 + ECD_03690 0.48 -0.5 3,890,913 + ECD_03690 0.48 +0.4 3,890,914 - ECD_03690 0.48 -0.9 3,890,914 - ECD_03690 0.48 -1.8 3,890,914 - ECD_03690 0.48 +0.1 3,890,914 - ECD_03690 0.48 +0.6 3,890,914 - ECD_03690 0.48 -0.9 3,890,915 + ECD_03690 0.49 -1.4 3,890,915 + ECD_03690 0.49 -0.1 3,890,916 - ECD_03690 0.49 +0.3 3,890,916 - ECD_03690 0.49 +1.4 3,890,916 - ECD_03690 0.49 -0.4 3,890,916 - ECD_03690 0.49 -0.3 3,890,916 - ECD_03690 0.49 -0.6 3,890,916 - ECD_03690 0.49 +0.4 3,890,916 - ECD_03690 0.49 +0.0 3,890,916 - ECD_03690 0.49 +0.9 3,890,916 - ECD_03690 0.49 -0.8 3,890,935 + ECD_03690 0.51 -0.4 3,890,936 - ECD_03690 0.51 +0.1 3,890,936 - ECD_03690 0.51 +0.8 3,890,937 + ECD_03690 0.51 -0.1 3,891,052 - ECD_03690 0.64 +0.1 3,891,190 - ECD_03690 0.79 -0.3 3,891,190 - ECD_03690 0.79 +0.3 3,891,398 - +0.5
Or see this region's nucleotide sequence