Strain Fitness in Escherichia coli BL21 around ECD_03687

Experiment: Bas27

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03685 and ECD_03686 overlap by 4 nucleotidesECD_03686 and ECD_03687 overlap by 4 nucleotidesECD_03687 and ECD_03688 overlap by 1 nucleotidesECD_03688 and ECD_03689 are separated by 83 nucleotides ECD_03685: ECD_03685 - diaminopimelate epimerase, at 3,885,039 to 3,885,863 _03685 ECD_03686: ECD_03686 - DUF484 family protein, at 3,885,860 to 3,886,567 _03686 ECD_03687: ECD_03687 - site-specific tyrosine recombinase, at 3,886,564 to 3,887,460 _03687 ECD_03688: ECD_03688 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis, at 3,887,460 to 3,888,176 _03688 ECD_03689: ECD_03689 - DNA-dependent ATPase I and helicase II, at 3,888,260 to 3,890,422 _03689 Position (kb) 3886 3887 3888Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3885.617 kb on + strand, within ECD_03685at 3885.618 kb on - strand, within ECD_03685at 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.814 kb on - strandat 3885.814 kb on - strandat 3885.815 kb on + strandat 3885.815 kb on + strandat 3885.841 kb on - strandat 3885.841 kb on - strandat 3885.859 kb on + strandat 3885.859 kb on + strandat 3885.860 kb on - strandat 3885.981 kb on + strand, within ECD_03686at 3886.045 kb on + strand, within ECD_03686at 3886.046 kb on - strand, within ECD_03686at 3886.051 kb on + strand, within ECD_03686at 3886.051 kb on + strand, within ECD_03686at 3886.051 kb on + strand, within ECD_03686at 3886.051 kb on + strand, within ECD_03686at 3886.052 kb on - strand, within ECD_03686at 3886.125 kb on + strand, within ECD_03686at 3886.130 kb on + strand, within ECD_03686at 3886.131 kb on - strand, within ECD_03686at 3886.172 kb on - strand, within ECD_03686at 3886.255 kb on - strand, within ECD_03686at 3886.287 kb on + strand, within ECD_03686at 3886.288 kb on - strand, within ECD_03686at 3886.288 kb on - strand, within ECD_03686at 3886.315 kb on + strand, within ECD_03686at 3886.344 kb on - strand, within ECD_03686at 3886.506 kb on + strandat 3886.506 kb on + strandat 3886.506 kb on + strandat 3886.507 kb on - strandat 3886.564 kb on - strandat 3886.574 kb on + strandat 3886.574 kb on + strandat 3886.595 kb on - strandat 3886.595 kb on - strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.626 kb on + strandat 3886.644 kb on + strandat 3886.644 kb on + strandat 3886.644 kb on + strandat 3886.645 kb on - strandat 3886.645 kb on - strandat 3886.649 kb on - strandat 3886.745 kb on + strand, within ECD_03687at 3886.807 kb on - strand, within ECD_03687at 3887.311 kb on - strand, within ECD_03687at 3887.388 kb on + strandat 3887.389 kb on - strandat 3887.422 kb on + strandat 3887.459 kb on - strandat 3887.523 kb on + strandat 3887.523 kb on + strandat 3887.523 kb on + strandat 3887.523 kb on + strandat 3887.524 kb on - strandat 3887.567 kb on + strand, within ECD_03688at 3887.824 kb on + strand, within ECD_03688at 3887.825 kb on - strand, within ECD_03688at 3887.905 kb on - strand, within ECD_03688at 3887.960 kb on + strand, within ECD_03688at 3887.964 kb on + strand, within ECD_03688at 3887.964 kb on + strand, within ECD_03688at 3887.965 kb on - strand, within ECD_03688at 3887.965 kb on - strand, within ECD_03688at 3887.965 kb on - strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.011 kb on - strand, within ECD_03688at 3888.172 kb on + strandat 3888.173 kb on - strandat 3888.189 kb on + strandat 3888.189 kb on + strandat 3888.189 kb on + strandat 3888.191 kb on + strandat 3888.191 kb on + strandat 3888.191 kb on + strandat 3888.193 kb on + strandat 3888.193 kb on + strandat 3888.193 kb on + strandat 3888.195 kb on + strandat 3888.239 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
remove
3,885,617 + ECD_03685 0.70 +0.9
3,885,618 - ECD_03685 0.70 +2.9
3,885,813 + -0.1
3,885,813 + +0.1
3,885,813 + +1.3
3,885,813 + -0.6
3,885,813 + +1.9
3,885,814 - +1.3
3,885,814 - +0.9
3,885,815 + +1.3
3,885,815 + +0.9
3,885,841 - -2.2
3,885,841 - -2.9
3,885,859 + +1.1
3,885,859 + +0.0
3,885,860 - +0.2
3,885,981 + ECD_03686 0.17 -1.0
3,886,045 + ECD_03686 0.26 +0.0
3,886,046 - ECD_03686 0.26 +0.5
3,886,051 + ECD_03686 0.27 +0.1
3,886,051 + ECD_03686 0.27 +1.1
3,886,051 + ECD_03686 0.27 -0.6
3,886,051 + ECD_03686 0.27 -0.6
3,886,052 - ECD_03686 0.27 -0.3
3,886,125 + ECD_03686 0.37 +0.1
3,886,130 + ECD_03686 0.38 -0.1
3,886,131 - ECD_03686 0.38 -0.7
3,886,172 - ECD_03686 0.44 -0.1
3,886,255 - ECD_03686 0.56 -0.9
3,886,287 + ECD_03686 0.60 -0.3
3,886,288 - ECD_03686 0.60 -0.3
3,886,288 - ECD_03686 0.60 -0.0
3,886,315 + ECD_03686 0.64 +0.4
3,886,344 - ECD_03686 0.68 +0.5
3,886,506 + +0.0
3,886,506 + -0.2
3,886,506 + -0.1
3,886,507 - -1.1
3,886,564 - -0.1
3,886,574 + -0.5
3,886,574 + +1.5
3,886,595 - +1.6
3,886,595 - -0.1
3,886,598 + +0.3
3,886,598 + -0.7
3,886,598 + +1.4
3,886,598 + -0.5
3,886,598 + -0.6
3,886,598 + -0.2
3,886,598 + +0.6
3,886,599 - -0.6
3,886,599 - +0.3
3,886,599 - -0.8
3,886,599 - +0.2
3,886,599 - +1.3
3,886,626 + -0.7
3,886,644 + -0.4
3,886,644 + +1.9
3,886,644 + -1.6
3,886,645 - -0.3
3,886,645 - -0.0
3,886,649 - +1.9
3,886,745 + ECD_03687 0.20 -0.8
3,886,807 - ECD_03687 0.27 +0.3
3,887,311 - ECD_03687 0.83 -1.1
3,887,388 + -0.5
3,887,389 - -0.1
3,887,422 + -2.5
3,887,459 - +0.6
3,887,523 + +0.2
3,887,523 + +0.7
3,887,523 + -0.3
3,887,523 + +1.1
3,887,524 - -0.5
3,887,567 + ECD_03688 0.15 +1.2
3,887,824 + ECD_03688 0.51 +0.4
3,887,825 - ECD_03688 0.51 +0.6
3,887,905 - ECD_03688 0.62 +0.2
3,887,960 + ECD_03688 0.70 +0.0
3,887,964 + ECD_03688 0.70 +0.8
3,887,964 + ECD_03688 0.70 +0.2
3,887,965 - ECD_03688 0.70 -0.4
3,887,965 - ECD_03688 0.70 +0.1
3,887,965 - ECD_03688 0.70 -0.4
3,888,010 + ECD_03688 0.77 +0.5
3,888,010 + ECD_03688 0.77 -0.0
3,888,010 + ECD_03688 0.77 -0.3
3,888,010 + ECD_03688 0.77 +0.1
3,888,011 - ECD_03688 0.77 -0.1
3,888,172 + +0.4
3,888,173 - -0.3
3,888,189 + -0.1
3,888,189 + -0.2
3,888,189 + -0.7
3,888,191 + -0.1
3,888,191 + -0.1
3,888,191 + -0.1
3,888,193 + +0.6
3,888,193 + +1.1
3,888,193 + +0.1
3,888,195 + -0.7
3,888,239 + +0.3

Or see this region's nucleotide sequence